BAC Information

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BAC

Clone NameMSMg01-350E10
Chromosome9 (Build37)
Map Location 22,344,365 - 22,543,947
singlet/doubletdoublet
Overlap geneBbs9
Upstream geneAB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, LOC100040805
Downstream geneBmper, LOC100040866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350E10.T7 (MSMg01no350_e10.b1)MSMg01-350E10.TJ (MSMg01no350_e10.g1)
ACCAG461927AG461928
length756771
length of high quality
(start - end)
345 (77 - 421)440 (85 - 524)
definitionCHROMAT_FILE: MSMg01no350_e10.b1 PHD_FILE: MSMg01no350_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:09 2005CHROMAT_FILE: MSMg01no350_e10.g1 PHD_FILE: MSMg01no350_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,344,365 - 22,344,709)(22,543,508 - 22,543,947)
sequence
TTCTTTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTCTCTGCCAGGAGAAGAAGTGGGTTGACCAGAAGT
ACAAAGGAACTGGTTGCCACTCACACAGAACTTACATCAGCATGAGGTCT
GTGGGTGTGCACATCCCATATCTTCCTGTGGGCAAAGTGGCTCTCTGTGG
CACCTGTGCACATCTGCATTGGTCAGTATTTCAGGTGCAGGAAGATGAGC
TAATCTTTGAAGGAAATGAAATTGAACTTGTTTCAAATTCAGCTACTTTG
ATTCAGCAAGCTATAGTGATTAATAATTATATTGAAAAGTTTGGGTAGTG
TCTGTGACTCTAAACAGGAAGTTTCTCAGGCTGATGAATGTGAACTGAGC
TGCATAGCCACAGAAATAAAGCTATGAACTGTAGGACTAGTTTGTGATAT
TTTGATGATTCAATAACGGAGTTCCAGGCGCTGGTTTAGAAAGTCCTACT
GGATGAATGCTGACCGATGCTGTTCACTGTTCGTTATTTCTCCTGTGATC
ACCTGCTTTGACTGATTGACTGCACTCTTTTATCGTGTCTCCTTAGTTCT
GATAATCCACTGTTCCCCGCCTCTTCGCCCTTTTTTCTTATCACATCACT
ACTCATACACTTTCTTACTTCTCTCCTCCCGCTCTTTCTGTTATTCCCTA
CGCTCCTCAATCCCCCTTCTTTCACCCTTTTCTTCCCTTTTTTTACTCTC
CCCCTA
TTTCCCTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGAAAACTAACTTT
CTAAACACTGATCAAGTGGGTGAGAAGATTCAAAGTTGCTGTAGTGACAA
ATGAAGAAAAAAGACTATTATTCCAATCATAAATAACAGCAAACTAAAAT
TTAACTGGAAAGGATCTTCAAGAATACTATAGTATTTTTTAGTATAAAAT
ATGACCCAAATTCATATGAAGAACAATATCAATGTCATATTTTTGCTATA
GGGCCCCACATCTCTAGGCTCAATTAAACATCAGAAAGACTGTAGATGAT
GGAAACTGTAATTGCATCACCCAGGGGACCCAAAGGGTAGTGGCCCCAGC
TTCAGTACAACAATCTCTAGGAAGCCAAGGGCTCAGTATCTTCAAGCTGC
ATTTAAAGCTTTCCATAAACTCTGTGTGCCAACAAGTTGAGAAGGCTGAA
GAAAGCAAACAGCTGGCACTGCTAACCTAATAGCCTATAATCCTCCCAGC
TATGAGCAGACAAACCATGCTGAATATGGAGAAAACACCCCTCATCTGCT
TGAAATCAATTTAGTGATTTTTATGAAAAATGCCCCCCTAATGAAAATGA
ACTGGCTATTTTGTAAAAAACATTTGGGATCCCTGGACATTAATCCAACC
AACGGTGAATCACCGTAAGTTTTCCCCCAAAACAACTTGGTGGGGGGTTG
GGTTTCCCCTCCCTTTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_e10.b1 MSMg01no350_e10.b1 CHROMAT_FILE:
MSMg01no350_e10.b1 PHD_FILE: MSMg01no350_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:09 2005
         (345 letters)



>mm_chr9_22344165_22344909
          Length = 745

 Score =  613 bits (317), Expect = e-180
 Identities = 338/345 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagaagtgggttgaccagaagtacaaaggaactggttgccactcacacagaacttaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 agaagaagtgggttgaccagaagtacaaaggaactggttgccactcacacagaacttaga 260

                                                                       
Query: 61  tcagcatgaggtctgtgggtgtgcacatcccatatcttcctgtgggcaaagtggctctct 120
           |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 261 tcagcatgaggtctgtgggtgtgcacattccatgtcttcctgtgggcaaagtggctctct 320

                                                                       
Query: 121 gtggcacctgtgcacatctgcattggtcagtatttcaggtgcaggaagatgagctaatct 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgggacctgtgcacatctgcattggtcagtatttcaggtgcaggaagatgagctaatct 380

                                                                       
Query: 181 ttgaaggaaatgaaattgaacttgtttcaaattcagctactttgattcagcaagctatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaaggaaatgaaattgaacttgtttcaaattcagctactttgattcagcaagctatag 440

                                                                       
Query: 241 tgattaataattatattgaaaagtttgggtagtgtctgtgactctaaacaggaagtttct 300
           ||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgattaataaggatattgaaacgtttgggtagtgtctgtgactctaaacaggaagtttct 500

                                                        
Query: 301 caggctgatgaatgtgaactgagctgcatagccacagaaataaag 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggctgatgaatgtgaactgagctgcatagccacagaaataaag 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no350_e10.g1 MSMg01no350_e10.g1 CHROMAT_FILE:
MSMg01no350_e10.g1 PHD_FILE: MSMg01no350_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:09 2005
         (440 letters)



>mm_chr9_22543308_22544147
          Length = 840

 Score =  804 bits (416), Expect = 0.0
 Identities = 434/440 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagaaaactaactttctaaacactgatcaagtgggtgagaagattcaaagttgctgtag 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 640 ttagaaaactaactttctaaacactgatcatgtgggtgagaagattcaaagttgctgtag 581

                                                                       
Query: 61  tgacaaatgaagaaaaaagactattattccaatcataaataacagcaaactaaaatttaa 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 580 tgacaaatgaagaaaaaagactattattccattcataaataacagcaaactaaaatttaa 521

                                                                       
Query: 121 ctggaaaggatcttcaagaatactatagtattttttagtataaaatatgacccaaattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ctggaaaggatcttcaagaatactatagtattttttagtataaaatatgacccaaattca 461

                                                                       
Query: 181 tatgaagaacaatatcaatgtcatatttttgctatagggccccacatctctaggctcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tatgaagaacaatatcaatgtcatatttttgctatagggccccacatctctaggctcaat 401

                                                                       
Query: 241 taaacatcagaaagactgtagatgatggaaactgtaattgcatcacccaggggacccaaa 300
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 400 taaacatcagaaagactgtagatgatggaaactgtaatcgtatcacccaggggacccaaa 341

                                                                       
Query: 301 gggtagtggccccagcttcagtacaacaatctctaggaagccaagggctcagtatcttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 340 gggtagtggccccagcttcagtacaacaatctctaggaagccaagggctcagtatattca 281

                                                                       
Query: 361 agctgcatttaaagctttccataaactctgtgtgccaacaagttgagaaggctgaagaaa 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 280 agctgcatttaaagctttccataaactctgtgtgtcaacaagttgagaaggctgaagaaa 221

                               
Query: 421 gcaaacagctggcactgcta 440
           ||||||||||||||||||||
Sbjct: 220 gcaaacagctggcactgcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)