BAC Information

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BAC

Clone NameMSMg01-350L05
Chromosome9 (Build37)
Map Location 106,510,554 - 106,510,876
singlet/doubletsinglet
Overlap genenone
Upstream genePik3r4, E330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4
Downstream geneLOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350L05.T7 (MSMg01no350_l05.b1)MSMg01-350L05.TJ (MSMg01no350_l05.g1)
ACCAG462250AG462251
length820787
length of high quality
(start - end)
323 (77 - 399)371 (87 - 457)
definitionCHROMAT_FILE: MSMg01no350_l05.b1 PHD_FILE: MSMg01no350_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:42 2005CHROMAT_FILE: MSMg01no350_l05.g1 PHD_FILE: MSMg01no350_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTTTTCTTCTATXXXXXXXXXXXXXXXXXXXXXXCTAAATCGAGAGAA
TCCGCGGAATTCTTTCCTTTCTTGGATTGAGAGGAATCTGGAAGCCGTGC
GATAAGAAGCGGTGTTGGCAGAGATGTACGTTTTCAGACATGGATGGCAG
AGGAGCGGGAGTTGGTACAACTTCATAAAAGAGCAATTTGAGTCTGGTGT
GGTAGTGCATGGCTGCAATCCCATCATTCGGGAGGCTGAGGCAAGAGGAC
AGAGAGTTTATAGCTAGCCTGGGCTATGTAGTCTAGAAAACAGACAAACA
AACAAACAAAAAAACCTGGCGTCATCTGATTTTTTTTAATAAGCTCATAA
TCTTTGATGCAGAAACCACTCTGTCCTGTAGAGCTCTGGATAACAACATC
AGCGTGTGCCAACGAGTACTTACCCCCCCCCCACCCTGATATTGCTAGTG
CCTTGTCAAAATATATTTATCTAAAAGAGAAATACCCCTCCACACCGGAA
GTGCAATGGATAATTTCATGTCTTTTTCAACTCTCTGAATCTTTATTAAT
ATTGGTTTCAACCTCTCTCCTTCATTTTAGCCCGCCTTTATTCTTCCCCT
CCTTTTCCGCGCCTTTATTCCACTTTCGCTTTCTCTTCCCCTCATTCCTA
CTTTCTCTTACCTCTTTCTCTTTCCTCCTCTGTTTTATGTTCCCTTCTTT
TTTTTCCTTCTCTTCTTCCTTCTCTTTATTTTCCCGCCTCACACTTACTT
TTATCATTTCCTACACCCCCTATTTTGCTTCTATCCTACTAACACGCGTC
ATCCCTCTCATGTCTTTAGT
CGTTTTTCGACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATATTTATACAA
GTAATTTTTAGCCCTCTAGTANAAAAAAAAAAAAAAAAAAAAAAAAGGTC
CAGTTAGAGTTCTGTGAACCTGCATGTGTCACAGGCTAATTGCGCTAGGA
TAGAAAGCAGGCTTGGAACAGATTTATGATCAGGGAAAACATTTCTTCTG
GGCTAGCTGTGAAACCATTATCTGATAATTAAAGGTCATAAGCTGGGAAT
GGGCAATTTATTGTAGGTACAAGGACAGAAGATAAATATTAGCTGGGGTT
TTCTATATAAAACTCAGAAACTAATAAGATATCAGGCCTCTTGACAAAAT
GGTGCTAACTTAAGACAAGAATTTTTGTTTTAAACTCTTAATGAACTTGT
GTAGCTAGTCAATAATGAATGTTTAATTAAATACCAGCACACATTCCCGA
TGAAACTCCCTATTTGATTTTTGATGAACTTTTAAAAAGTAAAAATCCTT
GGAATAACATGGGTTCTATTCCGAACACAATGTCATAACCTTCATTGTTG
CTATATTTTCTCCTTCTTTTTTTAATATTCCAATCTATTTTTTTTTTTTT
CCTTTTTCTTATATTAAAATTCTCTTTTTTTCTATCTTTCTCAAACTATA
ATTCCTTTTATTACTTTTCTCCACCACCCCCCTATTATAATCACAATCAT
CTTCTCTCTCTTTCCCCATACACTTTTTCTACTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_l05.b1 MSMg01no350_l05.b1 CHROMAT_FILE:
MSMg01no350_l05.b1 PHD_FILE: MSMg01no350_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:42 2005
         (323 letters)



>mm_chr9_106510354_106511076
          Length = 723

 Score =  586 bits (303), Expect = e-172
 Identities = 318/327 (97%), Gaps = 8/327 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgagaggaatctggaagccgtgcgataagaagcggtgttggcagagatgtacgttttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgagaggaatctggaagccgtgcgataagaagcggtgttggcagagatgtacgttttca 260

                                                                       
Query: 61  gacatggatggcagaggagcgggagttggtacaacttcataaaagagcaatttgagtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacatggatggcagaggagcgggagttggtacaacttcataaaagagcaatttgagtctg 320

                                                                       
Query: 121 gtgtggtagtgcatggctgcaatcccatcattcgggaggctgaggcaagaggacagagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtggtagtgcatggctgcaatcccatcattcgggaggctgaggcaagaggacagagag 380

                                                                       
Query: 181 tttatagctagcctgggctatgtagtctagaaaacagacaaacaaacaaacaaaaaaacc 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaaagctagcctgggctatgtagtctagaaaacagacaaacaaacaaacaaaaaaacc 440

                                                                       
Query: 241 tggcgtcatctgat----tttttttaataagctcataatctttgatgcagaaaccactct 296
           ||||||||||||||    |||    |||||||||||||||||||||||||||||||||||
Sbjct: 441 tggcgtcatctgataaagttt----aataagctcataatctttgatgcagaaaccactct 496

                                      
Query: 297 gtcctgtagagctctggataacaacat 323
           |||||||||||||||||||||||||||
Sbjct: 497 gtcctgtagagctctggataacaacat 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)