BAC Information

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BAC

Clone NameMSMg01-351P19
Chromosome9 (Build37)
Map Location 101,759,632 - 101,760,135
singlet/doubletsinglet
Overlap genenone
Upstream geneStag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
Downstream geneEphb1, 9630041A04Rik, Ky, LOC664843, Cep63, Anapc13, Amotl2, EG434510, Ryk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351P19.T7 (MSMg01no351_p19.b1)MSMg01-351P19.TJ (MSMg01no351_p19.g1)
ACCAG463226AG463227
length1,288734
length of high quality
(start - end)		---503 (85 - 587)
definitionCHROMAT_FILE: MSMg01no351_p19.b1 PHD_FILE: MSMg01no351_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:22 2005CHROMAT_FILE: MSMg01no351_p19.g1 PHD_FILE: MSMg01no351_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTCCCACCAGATCATACATGGGCGCGCTCCTATAGGGGGGGGGGGG
GGTGTTTCCACAGAAACGGGGNGANGAGATANCTTTTGNGATTTTTCCCC
CGAGATAGCAGCGATTTTACATGCTGTAGTCAATCTCAAGAAGCGCATGT
GATGTTTCACCTTCACATGTGTGACGCCCCCCCGATAATAGAAGGAGAGA
GGAGAGAGGCGCCTGATGATCGATCTGTATATAGTGTGTGTTCGAAGTTA
TTCCTTAGTTCATTATCTTCGTCGATAGGGAAGAATCAAGTTTTGCGCTT
TATATAGGGCTCTGTGTGACCTACGTGCGTCCATCTTCGCGTAAGTCTTA
TCGGCCGATATAGTACCGCATATGAGGGTTACCGTGTGCAGACTAGAGAG
ACCGAGCTAAGTCTACACAGTTGCAACATAAATGTCCTGACAGTGCCCGA
ATACATAGCCCGTGTATTGATAGATTATGTTTGCATGCTAAGAGGACGAC
TTATGTTATATTTCTGTAATAGTGGGGTGTCCTAGTCTTGTCGTATCTCA
CCTCGGCCTCTGCTCTGCTGCGAGTGATGTTTGTCAAGCCCCTCCCCCCC
CATACCATCGTGCGATCTGATAGAGACGAATGGNATGTATAACAATACGA
CCTCTAGGTCATTCGGTTATACGCACATAGAAACAGCTTCGGACACAACA
GAGCTTAGCATTCGCTTATCACCCATCGATATCCAATTATATCATCAGTA
CACTAATACGTCATATCGCCTCCCTCGCTGTCTCGACTACACCCTCAACT
TCATTATATNGATGTTGTATACGACCGAACGNCTCTTCATAGCCTTCAAC
TTCGACGCTTAACCTTTCTATTATGCTAACAATAAAGGTTGACGTAATAC
ATTACGCACGTCATCATTAAATACGATAACACTCAACCACCATATCGATC
GCTCTCGCTCAATAGTAGTCACGTGATCATATTATCACTCACTCCGCAAC
TGGCACGCTCGCATCCGCCGTATGCGTGGCACCCGCTCTTATACGTCGTG
CGCCTATGACTAATCGCGCNTAGGAATGTAGATGATAGCGTAAGCACTGC
GATATAGTANATCGAGTTGTTATACATAGTAGTACGNGCTAATGTTATCG
CTCGTATATACACGCTTGCGCTGCGAATACANTACAACATGCACGCACGA
TGTCTTTGTGTCATTCGCCGCCTCATACACGTTTATATATATCGCGAGTC
GCGCCGCCATCTATAATGCTNCTCTATATATCTGACTN

TTTNTTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTACTTCAATTTT
GTCTTTTTGGAATATCCCCAAATGATCTATGATCTCCCCTTGAGTCTGTG
ACTATTTTTTATCTTTCTACTTTCTAAAGGTTCACCATCAATGTCATCTT
CCAATCTTTCCAGTGATGGCTTCCTTGTCATTCCTTACTTTAGGATTTAA
GAGGACAGTCTCGCTCTCTGAAAGCTAAACTCTCTTGGTAGCCTCTTTTC
TTTGGGTTCATGGAGATAGGAAACTGGAAACATGACTAATCACTATACAG
GATGTCCTTCTTGTGGACATTCAAGTCACGTGGGGCATGGACTAACAATA
TGGACTGCTGGTTGACTTCTTCCTTGAGGTTGAGGAAACCCTCAACTCCA
TTATCTTCACCTGCCTCTCTAGACTGGTCAGATGCCCCAGAGAAATACCT
TCTTGTCTTTTTGGAAAGTCAGATCTGGCTGCTAGAGTTGTGGTGGCTGA
AATTGAAAGGGGGCTTTGTGGCTGGGACAATCTGCATATAGTCTTGCATG
TACTGGCTTCTTCTGTTCTGGTACCCTTGAACTTGTATGGGCCTGATGTT
CCCCCAAAAAAAGNCCTCTTTTCTCCCCTTGCAAAATTCTTACAAAATAG
AGAAACAACCGCAATTTGGACTTAAGGCGGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_p19.g1 MSMg01no351_p19.g1 CHROMAT_FILE:
MSMg01no351_p19.g1 PHD_FILE: MSMg01no351_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:22 2005
         (503 letters)



>mm_chr9_101759591_101760493
          Length = 903

 Score =  913 bits (472), Expect = 0.0
 Identities = 496/504 (98%), Gaps = 1/504 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctattacttcaattttgtctttttggaatatccccaaatgatctatgatctccccttgag 60
           ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 545 ctattgcttcaattttgtctttttggaatatccccaaatggtctatgatctccccttgag 486

                                                                       
Query: 61  tctgtgactattttttatctttctactttctaaaggttcaccatcaatgtcatcttccaa 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tttgtgactattttttatctttctactttctaaaggttcaccatcaatgtcatcttccaa 426

                                                                       
Query: 121 tctttccagtgatggcttccttgtcattccttactttaggatttaagaggacagtctcgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tctttccagtgatggcttccttgtcattccttactttaggatttaagaggacagtctcgc 366

                                                                       
Query: 181 tctctgaaagctaaactctcttggtagcctcttttctttgggttcatggagataggaaac 240
           |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 365 tctctgaaagctaagctctcttggtagactcttttctttgggttcatggagataggaaac 306

                                                                       
Query: 241 tggaaacatgactaatcactatacaggatgtccttcttgtggacattcaagtcacgtggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tggaaacatgactaatcactatacaggatgtccttcttgtggacattcaagtcacgtggg 246

                                                                       
Query: 301 gcatggactaacaatatggactgctggttgacttcttccttgaggttgaggaaaccctca 360
           |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 245 gcatgggctaacaatatggactgctggttgacttctttcttgaggttgaggaaaccctca 186

                                                                       
Query: 361 actccattatcttcacctgcctctctagactggtcagatgccccagagaaataccttctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 actccattatcttcacctgcctctctagactggtcagatgccccagagaaataccttctt 126

                                                                       
Query: 421 gtcttttt-ggaaagtcagatctggctgctagagttgtggtggctgaaattgaaaggggg 479
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcttttttggaaagtcagatctggctgctagagttgtggtggctgaaattgaaaggggg 66

                                   
Query: 480 ctttgtggctgggacaatctgcat 503
           ||||||||||||||||||||||||
Sbjct: 65  ctttgtggctgggacaatctgcat 42


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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