BAC Information

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BAC

Clone NameMSMg01-354D03
Chromosome9 (Build37)
Map Location 29,171,355 - 29,347,878
singlet/doubletdoublet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream geneSnx19, LOC666478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354D03.T7 (MSMg01no354_d03.b1)MSMg01-354D03.TJ (MSMg01no354_d03.g1)
ACCAG464884AG464885
length744750
length of high quality
(start - end)		593 (52 - 644)531 (80 - 610)
definitionCHROMAT_FILE: MSMg01no354_d03.b1 PHD_FILE: MSMg01no354_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:17 2005CHROMAT_FILE: MSMg01no354_d03.g1 PHD_FILE: MSMg01no354_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,347,290 - 29,347,878)(29,171,355 - 29,171,884)
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCGTCTAGGCTTGTACAGTGACCAAGCATGTCAGTTCAG
GGTGAACAGTTATGCCGTCTATGTTCCAAGCCTGGTGTAAGGTATTGAGA
CTATCAGGATTCTTGCCTAGGAGGAACAACTGGCAGAGAAAATGGGACCA
CAAGCTTTCATGAGGACACACAGTCATAATGGTATGAACATTCCAGCTGT
TCTGGAACTAGAAAAATGGGGTGCTCCATATAGTGGGGTAGGATGCTTTA
CATGGAGTGGGTGATGCCTCAGCTGCATCATGGAGTAGACGGAGCAATGC
ACATGGAGGAAGGAGAAAGTGGTTTGCAAGGAGAGGAGGTCCTGAGCATC
AAGGGACCACAGGCAGGCAGCATTTACATGTAGAGGTGCAAATACAAGCA
TCTCTCAGGAAAACAGAACCCACAGTAGATATTTATCTATAGAATGATGA
TACACACATTGGAAGACTGGGAGACAAAAAGAAATGCCACCATAATTCTG
TATACAGGGACACCAACTTGTCAGCCTGTGGAGGAACTAGGACCCTAGGA
CATGTGTATCTACCCTGGCCTCTCAGGAGAAGGAAGGAGAGTGACNCAGA
GATGTGAAAGAAGCAGTGAGCATTGAGATCTGCCCTGGCTGGGAAAGAGC
NAAGAACTTTCTGAGATGAATTGTTGCAGTAATTCTGGCAAAAA

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTATGTCTCCCACTTTTGAT
GCCTGAACATGTCCTTTTTCCATGACTCAAGGCTGCCCACACCCTACAGG
TAGAGGTTGAACTTAGAATGAAAGGAGAGGCCCTTCACTCCTGTCCAGTT
TCTCCCAATCAGTGCTGTGGCAACTAACTTCAAGAGAGCCATACACTTGG
AGGGAATAGAAGGAAGTCAAAAAACTGTGAGAAAACTGTGATCCACTGCT
GAAAGGTTGGGTTTCTTGCTTGGCAGCTCTACACACTGTCACACAACCCA
CAAGCAAACAGACAGGGAGGAGATCTGAGCTCAGTTCAGTAGAAGCAGGA
AGGCTGGGAGACTTCCAGAGGTTTCCCCCATTCCATAAGCACTCTGCTTA
CAACACTTGAAAAAAATGTGGCCACAGACTCAAAGCAATGAACAATTATT
GAGAGTTGTCAGGGAATGCCTGCTGACATCATTTCTGTTGAGAAGCAATC
AATCCAATGAAGAGGCTCTGGTCCTTTTCCATTTCCTGAGCTCCCACAAG
CCTATTTAATGTGGATGGCTCTAATTATAGCTGTAATAACTAAGACTCTG
AGTTGCTCCAGGTCACCATGCCACCTTGGATGTACAGTGCCTGGAGTCTC
CCTGCTGCTCCCACATGAAAAAGAGAAGAACCACGGTTCTAAAAAAGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_d03.b1 MSMg01no354_d03.b1 CHROMAT_FILE:
MSMg01no354_d03.b1 PHD_FILE: MSMg01no354_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:17 2005
         (593 letters)



>mm_chr9_29347086_29348078
          Length = 993

 Score = 1116 bits (577), Expect = 0.0
 Identities = 586/589 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccgtctaggcttgtacagtgaccaagcatgtcagttcagggtgaacagttatgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gaattcccgtctaggcttgtacagtgaccaagcatgtcagttcagggtgaacagttatgc 734

                                                                       
Query: 65  cgtctatgttccaagcctggtgtaaggtattgagactatcaggattcttgcctaggagga 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 733 cgtctatgttccaagcctggtgtaaggtattgaggctatcaggattcttgcctaggagga 674

                                                                       
Query: 125 acaactggcagagaaaatgggaccacaagctttcatgaggacacacagtcataatggtat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 acaactggcagagaaaatgggaccacaagctttcatgaggacacacagtcataatggtat 614

                                                                       
Query: 185 gaacattccagctgttctggaactagaaaaatggggtgctccatatagtggggtaggatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gaacattccagctgttctggaactagaaaaatggggtgctccatatagtggggtaggatg 554

                                                                       
Query: 245 ctttacatggagtgggtgatgcctcagctgcatcatggagtagacggagcaatgcacatg 304
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctttacttggagtgggtgatgcctcagctgcatcatggagtagacggagcaatgcacatg 494

                                                                       
Query: 305 gaggaaggagaaagtggtttgcaaggagaggaggtcctgagcatcaagggaccacaggca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gaggaaggagaaagtggtttgcaaggagaggaggtcctgagcatcaagggaccacaggca 434

                                                                       
Query: 365 ggcagcatttacatgtagaggtgcaaatacaagcatctctcaggaaaacagaacccacag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggcagcatttacatgtagaggtgcaaatacaagcatctctcaggaaaacagaacccacag 374

                                                                       
Query: 425 tagatatttatctatagaatgatgatacacacattggaagactgggagacaaaaagaaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tagatatttatctatagaatgatgatacacacattggaagactgggagacaaaaagaaat 314

                                                                       
Query: 485 gccaccataattctgtatacagggacaccaacttgtcagcctgtggaggaactaggaccc 544
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gccaccataattctatatacagggacaccaacttgtcagcctgtggaggaactaggaccc 254

                                                            
Query: 545 taggacatgtgtatctaccctggcctctcaggagaaggaaggagagtga 593
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 taggacatgtgtatctaccctggcctctcaggagaaggaaggagagtga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no354_d03.g1 MSMg01no354_d03.g1 CHROMAT_FILE:
MSMg01no354_d03.g1 PHD_FILE: MSMg01no354_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:17 2005
         (531 letters)



>mm_chr9_29171155_29172085
          Length = 931

 Score = 1017 bits (526), Expect = 0.0
 Identities = 529/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtatgtctcccacttttgatgcctgaacatgtcctttttccatgactcaaggctgccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtatgtctcccacttttgatgcctgaacatgtcctttttccatgactcaaggctgccca 260

                                                                       
Query: 61  caccctacaggtagaggttgaacttagaatgaaaggagaggcccttcactcctgtccagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccctacaggtagaggttgaacttagaatgaaaggagaggcccttcactcctgtccagt 320

                                                                       
Query: 121 ttctcccaatcagtgctgtggcaactaacttcaagagagccatacacttggagggaatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctcccaatcagtgctgtggcaactaacttcaagagagccatacacttggagggaatag 380

                                                                       
Query: 181 aaggaagtcaaaaaactgtgagaaaactgtgatccactgctgaaaggttgggtttcttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggaagtcaaaaaactgtgagaaaactgtgatccactgctgaaaggttgggtttcttgc 440

                                                                       
Query: 241 ttggcagctctacacactgtcacacaacccacaagcaaacagacagggaggagatctgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggcagctctacacactgtcacacaacccacaagcaaacagacagggaggagatctgag 500

                                                                       
Query: 301 ctcagttcagtagaagcaggaaggctgggagacttccagaggtttcccccattccataag 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 ctcagttcagtagaagcaggaaggctgggagacttccagaggtttctcccattccataag 560

                                                                       
Query: 361 cactctgcttacaacacttgaaaaaaatgtggccacagactcaaagcaatgaacaattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cactctgcttacaacacttgaaaaaaatgtggccacagactcaaagcaatgaacaattat 620

                                                                       
Query: 421 tgagagttgtcagggaatgcctgctgacatcatttctgttgagaagcaatcaatccaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagagttgtcagggaatgcctgctgacatcatttctgttgagaagcaatcaatccaatg 680

                                                             
Query: 481 aagaggctctggtccttttccatttcctgagctcccacaagcctatttaa 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagaggctctggtccttttccatttcctgagctcccacaagcctatttaa 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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