BAC Information

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BAC

Clone NameMSMg01-354F22
Chromosome9 (Build37)
Map Location 8,156,435 - 8,156,859
singlet/doubletsinglet
Overlap genenone
Upstream geneDync2h1, Dcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108
Downstream gene1700128F08Rik, Trpc6, Pgr, 9030420J04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354F22.T7 (MSMg01no354_f22.b1)MSMg01-354F22.TJ (MSMg01no354_f22.g1)
ACCAG465016AG465017
length786785
length of high quality
(start - end)		483 (47 - 529)425 (77 - 501)
definitionCHROMAT_FILE: MSMg01no354_f22.b1 PHD_FILE: MSMg01no354_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:30 2005CHROMAT_FILE: MSMg01no354_f22.g1 PHD_FILE: MSMg01no354_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTAGTTTCTCCATCTATGGTAATTGAGAGTTTTGCTGGGTATA
GTAGCCTGGGCTGGCATTTGTGTTCTCTTAGTGTCTGTATAACATCTTCT
GTCTTTCATAGTCTCTGGTGAGTAATCTAGTACAATTCTAATAGGTCTGC
CTTCATATGTTACTTGACCTTTTTCCCTTAGTGCTTTTAATATTTTCTCT
TTATTTAGTGCATTTGATGTTCTGATTGTTAAGTGTCAGGAGGAATTTCT
TTTCTAGTCCAGTCTGCTTGGAGTTATGTAGGCTTTTAGTATGTTCATGG
GCATCTCTTTCTTTAGGTTAGAAAGTTTTCATCTATAATTTTGTTGAAGA
TATTTACTAACCCTTTAAGTTAAAAATCTTCATTCTCATCTATACCTAGT
ATCCTTGGGTTTGGCCTTCTCATTGTGTCCTGGATTCCTCGATGTTTTGA
GTCAGAAACTTTTGGCATTTTCTTTGATTGTTGTGNCCATGTTTTCTATG
GAATCTTCTGCACCTAACAATCTCTCTGCCATCTCTTGTATTCTGTTGCT
GATGCTCGCATCTATGGGTTCTGATTTCTTTCCCAGAATTTTTTTCTCCC
CAATTTATTCCCTTTGGACTTTTTTTTTGTTTTCCCTTCCCTTTTTAGAT
CTTGGTGGGTAACGCCTAATTCCCTGGGCCGTTTGGATATAATTTTCTTT
AATCCTTTTAAAAACTTTGCGATTTCTTTCTTACCN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGGCATTTCATTGCATCGTGT
GTACACACTGACATAGCTGGCTGGAAGTACAGTCATTTTATTTTATGCAT
TAATGTTCAGCAGCTATGAGCTGAGAAGCAGTGTAACATATTGCAATGAA
GCAGCGGCCTTCATTCAAGGGGTGGTGAGAAAACAAATATGGAAAAGTAG
AGATAATCTGAATTCTGTCAGAATGATATGGGAAGCCTCTCACAAGAGAG
AGCCTGTGAGCTCAGTAGTGAGAGATGAATAAATGAATAAAGGTTGGGTA
AGGAGGGGACAGCATTCCTTTCACAGGGTACTGATGAGTTGGTACAGGGG
TGGAAGGGCTACTGAGGTTGGGAATGTGTAAAGAATTCTGACTGANAGAA
TAAGGAACTAAATCTTACTATACCATGGGACATTGAGTGTAAGAGCAAGG
AAACATCATTCCATTAACAGCTGGTGTAGAGGATGAGTCCGGAAAACAAA
AGGAGGCAGTAAGAAACCCAGCCATTTTTCAGGCACAGTAAGAACAGAGC
AACAGGGCCGGGAACCCTATTGAAGGGACCATCGCTATTTTTGTTTTTGG
GGGGTTAAAACCTACAAATCCCTTTTTAAAAAGGCTCCCTCTTGTGGCTT
TAATAAACATTTTATACTTTCTTTAGTATCACCTTGTTTCGTGGTCGGTT
GTTAATTAAAGAACTCCGACCATCTTCTTTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_f22.g1 MSMg01no354_f22.g1 CHROMAT_FILE:
MSMg01no354_f22.g1 PHD_FILE: MSMg01no354_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:30 2005
         (425 letters)



>mm_chr9_8156235_8157059
          Length = 825

 Score =  808 bits (418), Expect = 0.0
 Identities = 423/425 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttggcatttcattgcatcgtgtgtacacactgacatagctggctggaagtacagtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttggcatttcattgcatcgtgtgtacacactgacatagctggctggaagtacagtcat 260

                                                                       
Query: 61  tttattttatgcattaatgttcagcagctatgagctgagaagcagtgtaacatattgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttattttatgcattaatgttcagcagctatgagctgagaagcagtgtaacatattgcaa 320

                                                                       
Query: 121 tgaagcagcggccttcattcaaggggtggtgagaaaacaaatatggaaaagtagagataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagcagcggccttcattcaaggggtggtgagaaaacaaatatggaaaagtagagataa 380

                                                                       
Query: 181 tctgaattctgtcagaatgatatgggaagcctctcacaagagagagcctgtgagctcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgaattctgtcagaatgatatgggaagcctctcacaagagagagcctgtgagctcagt 440

                                                                       
Query: 241 agtgagagatgaataaatgaataaaggttgggtaaggaggggacagcattcctttcacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgagagatgaataaatgaataaaggttgggtaaggaggggacagcattcctttcacag 500

                                                                       
Query: 301 ggtactgatgagttggtacaggggtggaagggctactgaggttgggaatgtgtaaagaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtactgatgagttggtacaggggtggaagggctactgaggttgggaatgtgtaaagaat 560

                                                                       
Query: 361 tctgactganagaataaggaactaaatcttactataccatgggacattgagtgtaagagc 420
           ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 tctgactgaaagaataaggaactaaatcttactacaccatgggacattgagtgtaagagc 620

                
Query: 421 aagga 425
           |||||
Sbjct: 621 aagga 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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