BAC Information

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BAC

Clone NameMSMg01-354M18
Chromosome9 (Build37)
Map Location 50,250,295 - 50,360,618
singlet/doubletdoublet
Overlap geneLOC672372, 1600029D21Rik, Pts, Bcdo2
Upstream geneTtc12, Ncam1, EG667975, LOC100042806, LOC100043346
Downstream geneTex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354M18.T7 (MSMg01no354_m18.b1)MSMg01-354M18.TJ (MSMg01no354_m18.g1)
ACCAG465338AG465339
length762773
length of high quality
(start - end)		463 (45 - 507)581 (74 - 654)
definitionCHROMAT_FILE: MSMg01no354_m18.b1 PHD_FILE: MSMg01no354_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:03 2005CHROMAT_FILE: MSMg01no354_m18.g1 PHD_FILE: MSMg01no354_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,360,159 - 50,360,618)(50,250,295 - 50,250,868)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCGGATTTCAGCTCCTGTGCCAGAGAGTAATGGATTGTACGTCTGTTG
CAAATAATCTTTAGACAGGACTGAGATGGGATGGCAGGATGACTCATCTG
ACCCCCTAGGCAGCAAGTTCCTCTTCTTGGGTTGGGAGACTTTTCAGTCT
CTCAGCAGTGTCTAGCTCTTCCTTGAAAAACTAAAATAATCCAGAGAAAG
AAAATCATCCATAGTGCATCTTATTGTATCGATCATTTAAAGTTAAATAA
CACTAGACATTTTAGGCTTATGTATTGTGTTCTGAAGCTTTCTATAAATT
TGCATGGTCACTTACAACCTTAGGCATGGTAAGAATTTTTATTTTTCTGT
CTTANAAAGGAAGGGAAAGCACAGAGAGGTTGAAAACCTTACTTTGGAAG
TGACTCAAGATTTGAACCTAGGCGCTCTGGCTACGCTCTTTAAAGGAAGT
AATATTTGAGTTAGATCTTGAACAATAGGTAGCATTTTCTTTACTTTTTC
TGGTGTGTGTGTGTGTGTGTGNGNGTGTGTGTTNGNTCTTCTCTCTCTTT
CCGNCCTCCCCTTCTTCCCNACTTCTCTACGAATTCGTCCTCTATTTGCN
NTNNCCCACTTTTTCNTTCGATTCTTTCCCCTNTTCCNCCTCCGCCCCTT
CCATTCAGCTCCCATCGCTATCCCCTCCGCCACTCTGCANACCCCCTATA
CCTTCCCCNTCG

CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGATGAGCAAATGTCTGCATGCACAG
AGACCATGGAAAGAAAAGAAAGAGATTTGGCAGAGGAAGATAGAGCCAAG
CGCTTTATCTTGAAAGAGATAGAAGACAGCGAGAGATGGAAGTTAAGAAC
TTAATGAACTTGGGCGAAGGGAATAGATAGGTTTCTATAATCAATTAGAG
TTGCCAAGGCATGTGAGGCCATGAGGATTTTGAAAGGTTACTAGAATGCC
CTAGACTTCATCACTAACAACTGCAAACCCTTTGCTTTCATCCCCCAAAC
TTTGGTCACCTGAGACCTAAATCCACAACCCCCAACCACTCAGTTGTCAG
CAGTCCGAGATTTTTTAATCTTATCTAAATAAAAGTTAAAATGAAGGCCC
AAACCCTCTGAGGTTCCTCTTCCCATGTAGACGCCAGTGAAATCTCTCCA
CAAAACCACCAACCCTCTGCTCCATCATCCACACTTCACCATCTGCCTCT
GCCTCTCAGCTCACCAGCAGCTACTTTGCCACAGTGAGGCTATCTTTCCA
TAGCCCACCCTTGCACAAGCTGGCCCTTCTCTCCGGACTCTAGACTCACC
CTTCTCTTATAGCCTGCCCAACCCACCTCCCACAGCTCCCCGGAGACATT
GTTGTTTCTGGAGAGAGAAACTCCTTTGAGTCTTCTGGGCGAAACCTCTG
CTCCCTAAACGGGAGCTAATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_m18.b1 MSMg01no354_m18.b1 CHROMAT_FILE:
MSMg01no354_m18.b1 PHD_FILE: MSMg01no354_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:03 2005
         (463 letters)



>mm_chr9_50360100_50360962
          Length = 863

 Score =  868 bits (449), Expect = 0.0
 Identities = 457/460 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcggatttcagctcctgtgccagagagtaatggattgtacgtctgttgcaaataa 63
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 519 ggaattcggatttcagctcctgtgccagagagtaatggattgtgcgtctgttgcaaataa 460

                                                                       
Query: 64  tctttagacaggactgagatgggatggcaggatgactcatctgaccccctaggcagcaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 459 tctttagacaggactgagatgggatggcaggatgactcatctgaccccctaggcagcgag 400

                                                                       
Query: 124 ttcctcttcttgggttgggagacttttcagtctctcagcagtgtctagctcttccttgaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttcctcttcttgggttgggagacttttcagtctctcagcagtgtctagctcttccttgaa 340

                                                                       
Query: 184 aaactaaaataatccagagaaagaaaatcatccatagtgcatcttattgtatcgatcatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaactaaaataatccagagaaagaaaatcatccatagtgcatcttattgtatcgatcatt 280

                                                                       
Query: 244 taaagttaaataacactagacattttaggcttatgtattgtgttctgaagctttctataa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 taaagttaaataacactagacattttaggcttatgtattgtgttctgaagctttctataa 220

                                                                       
Query: 304 atttgcatggtcacttacaaccttaggcatggtaagaatttttatttttctgtcttanaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 219 atttgcatggtcacttacaaccttaggcatggtaagaatttttatttttctgtcttagaa 160

                                                                       
Query: 364 aggaagggaaagcacagagaggttgaaaaccttactttggaagtgactcaagatttgaac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aggaagggaaagcacagagaggttgaaaaccttactttggaagtgactcaagatttgaac 100

                                                   
Query: 424 ctaggcgctctggctacgctctttaaaggaagtaatattt 463
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  ctaggcgctctggctacgctctttaaaggaagtaatattt 60


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no354_m18.g1 MSMg01no354_m18.g1 CHROMAT_FILE:
MSMg01no354_m18.g1 PHD_FILE: MSMg01no354_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:03 2005
         (581 letters)



>mm_chr9_50250095_50251075
          Length = 981

 Score = 1094 bits (566), Expect = 0.0
 Identities = 572/574 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggatgagcaaatgtctgcatgcacagagaccatggaaagaaaagaaagagatttggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggatgagcaaatgtctgcatgcacagagaccatggaaagaaaagaaagagatttggcag 260

                                                                       
Query: 61  aggaagatagagccaagcgctttatcttgaaagagatagaagacagcgagagatggaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaagatagagccaagcgctttatcttgaaagagatagaagacagcgagagatggaagt 320

                                                                       
Query: 121 taagaacttaatgaacttgggcgaagggaatagataggtttctataatcaattagagttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagaacttaatgaacttgggcgaagggaatagataggtttctataatcaattagagttg 380

                                                                       
Query: 181 ccaaggcatgtgaggccatgaggattttgaaaggttactagaatgccctagacttcatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaaggcatgtgaggccatgaggattttgaaaggttactagaatgccctagacttcatca 440

                                                                       
Query: 241 ctaacaactgcaaaccctttgctttcatcccccaaactttggtcacctgagacctaaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaacaactgcaaaccctttgctttcatcccccaaactttggtcacctgagacctaaatc 500

                                                                       
Query: 301 cacaacccccaaccactcagttgtcagcagtccgagattttttaatcttatctaaataaa 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 cacaacccccaaccactcagttgtcagcagtccgagattttgtaatcttatctaaataaa 560

                                                                       
Query: 361 agttaaaatgaaggcccaaaccctctgaggttcctcttcccatgtagacgccagtgaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttaaaatgaaggcccaaaccctctgaggttcctcttcccatgtagacgccagtgaaat 620

                                                                       
Query: 421 ctctccacaaaaccaccaaccctctgctccatcatccacacttcaccatctgcctctgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctctccacaaaaccaccaaccctctgctccatcatccacacttcaccatctgcctctgcc 680

                                                                       
Query: 481 tctcagctcaccagcagctactttgccacagtgaggctatctttccatagcccacccttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctcagctcaccagcagctactttgccacagtgaggctatctttccatagcccacccttg 740

                                             
Query: 541 cacaagctggcccttctctccggactctagactc 574
           ||||||||||||||||||||| ||||||||||||
Sbjct: 741 cacaagctggcccttctctcccgactctagactc 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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