BAC Information

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BAC

Clone NameMSMg01-355G18
Chromosome9 (Build37)
Map Location 22,398,339 - 22,398,791
singlet/doubletsinglet
Overlap geneBbs9
Upstream gene1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, LOC100040805
Downstream geneBmper
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355G18.T7 (MSMg01no355_g18.b1)MSMg01-355G18.TJ (MSMg01no355_g18.g1)
ACCAG465814AG465815
length760768
length of high quality
(start - end)		511 (50 - 560)455 (80 - 534)
definitionCHROMAT_FILE: MSMg01no355_g18.b1 PHD_FILE: MSMg01no355_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:52 2005CHROMAT_FILE: MSMg01no355_g18.g1 PHD_FILE: MSMg01no355_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTACATTATTTGATGTTAAGAGTGGCAGTGCTTATATAAGGT
TTTCTGCTCTTATGGAAACATAACGTGATGGATTAATTATGGAGACAAAG
GCTTTTAGTATTTTTCCACCGCCACTCCCCGGCACGTAAGTACCTAATAT
ATCTTATGAATGTTTTGCTTTAAACGTTGGCATTTGAAGGGCTGAGGGCT
GGCTCAGTAGTTAAAAGCACTTGCTGCTCTTGCAGAGGACCTGGGTTCAT
TTTGCAGCACCCACGCAGTGCCTCACAGCCATCCATAATCTCTGACGCCC
TCTTCTGGCCTCTATGGGCACTAGGCACACACATGGTACACATGAAAGGA
AACACTCATACCCACAAATAATTTTTTAAAGACCACATAAAATTTTTAAA
ATAATCTTTAAGAACAATTTTTTTTAAAGCTGTGTGAGGTTGTATACTCC
TGTAATCCCAGCACTTAAGTGGCTGAGGAGAGAGGAGGGTCAGGAGTTCA
AAGTTATCCTCAGCTGTGTAGTGAGTACTAGGTCAGCCTACATGAAGCTT
GTGTCACTGCCAAAGGAAGTGCTGAATCGAGTTTTCTTTCTTGATTGAAA
TGAACCCTGTCTTGGGAATTAAGACAGAATTTTCACCTTTCTGAGAATCA
CTAAAGCAACCTCTGGGGGGTTATTCCTGGGGCTTTATGCAAATGGGGAC
CCCCTCCCCC

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATGAGTTGGGCATGATTTG
ACTGACATTTGATCAATATCATTTGATGACAAAGGTGTGCTAAAGTTAAC
GGCAGCATCAGATGTTTGTTGTGCATAAGCACGCGTCACAGAACCCAGCA
TTCATCTTATCTAGGACTGAAGCCACCATGATCCTGTACATGCTAGACAA
ATGCTCTACCACATAGTCACATCTCCTGCCCTAATGTAAGTACTTTCTGT
CGCTGAAGGGAGTCCTGTGGTATTACTGTTTAGGGCCACTCTAGTTTCAA
GTTGTTGTGGGAGAACTACCACTTCCCTCGGAGGCTTCTGGGCAGCTGGC
TACTAGAATGGGTGCTTCTTCTTGCAGCAGAGGACTGACTCTTCCTTGTT
TTTCAAGCTTTACAGAGAATCTGTATACAAGAATGTTGGTTGAAGGGACA
GATAAATTAGTGTAGGTGTGATCTGTAAATAAGACTCAGCGTTTGGGTCC
AAGACACACTGATGACACATATCTGTAATTCCCAGAATTCCTGCCGCAAA
GCAGGAAGGCCAGGTCGGAACTTTCTTGGGCAAGGAATCCTGGGGCATGC
TTTTGCTTCACAAAATAAAAAAAAACCTTGCCTCTCCCTATAAGAAAAGC
AAAAATTGGTTCTTAAAAAAATAATTTCTCGAAGAAAACCCTGGTGGTGG
GGTGGTTCACTCATCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_g18.g1 MSMg01no355_g18.g1 CHROMAT_FILE:
MSMg01no355_g18.g1 PHD_FILE: MSMg01no355_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:52 2005
         (455 letters)



>mm_chr9_22397937_22398791
          Length = 855

 Score =  861 bits (445), Expect = 0.0
 Identities = 451/453 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   atgagttgggcatgatttgactgacatttgatcaatatcatttgatgacaaaggtgtgct 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 atgagttgggcatgatttgactgacatttgatcaatatcatttgatgacaaaggtgtgct 796

                                                                       
Query: 63  aaagttaacggcagcatcagatgtttgttgtgcataagcacgcgtcacagaacccagcat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aaagttaacggcagcatcagatgtttgttgtgcataagcacgcgtcacagaacccagcat 736

                                                                       
Query: 123 tcatcttatctaggactgaagccaccatgatcctgtacatgctagacaaatgctctacca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tcatcttatctaggactgaagccaccatgatcctgtacatgctagacaaatgctctacca 676

                                                                       
Query: 183 catagtcacatctcctgccctaatgtaagtactttctgtcgctgaagggagtcctgtggt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 catagtcacatctcctgccctaatgtaagtactttctgtcgctgaagggagtcctgtggt 616

                                                                       
Query: 243 attactgtttagggccactctagtttcaagttgttgtgggagaactaccacttccctcgg 302
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 615 attactgtttagggccactctagtttcaagttgttgtgggagagctaccacttccctcag 556

                                                                       
Query: 303 aggcttctgggcagctggctactagaatgggtgcttcttcttgcagcagaggactgactc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aggcttctgggcagctggctactagaatgggtgcttcttcttgcagcagaggactgactc 496

                                                                       
Query: 363 ttccttgtttttcaagctttacagagaatctgtatacaagaatgttggttgaagggacag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttccttgtttttcaagctttacagagaatctgtatacaagaatgttggttgaagggacag 436

                                            
Query: 423 ataaattagtgtaggtgtgatctgtaaataaga 455
           |||||||||||||||||||||||||||||||||
Sbjct: 435 ataaattagtgtaggtgtgatctgtaaataaga 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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