BAC Information

Click to search

BAC

Clone NameMSMg01-356B18
Chromosome9 (Build37)
Map Location 38,275,267 - 38,303,694
singlet/doubletdoublet
Overlap geneOlfr905, Olfr906
Upstream geneBC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904
Downstream geneOlfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356B18.T7 (MSMg01no356_b18.b1)MSMg01-356B18.TJ (MSMg01no356_b18.g1)
ACCAG466334AG466335
length730747
length of high quality
(start - end)
532 (44 - 575)423 (77 - 499)
definitionCHROMAT_FILE: MSMg01no356_b18.b1 PHD_FILE: MSMg01no356_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:44 2005CHROMAT_FILE: MSMg01no356_b18.g1 PHD_FILE: MSMg01no356_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,275,267 - 38,275,792)(38,303,272 - 38,303,694)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATATTTTTTAATGGGCAAGATAATGTCTTTTTTTTTGCAATCCTTT
ATTTGAAGCACTAACTATCCATATTCACTTTGAAGATAACTTGAGATATA
ACATTTGACATTTTCAGAGGATGGATGTGGTTGGCCTTTATCAGGTTAAA
CTGGCTATTTATTCAAAGATTAATGAACTATTATGGCAAATACAGATAAC
AGCTATTGTGGTGGACCAATATGATGTGGATAGCTAGGGTTGTTGTCCGA
GGACTTCCAGTATTTCTCCCAAAGTCCAATTAAGAAAATTGTAAATGGAT
GGGCTCTTATTGGCAATAAGACCTACCTTTGGGGTCATAAAAAACATCTA
CATCCTTTTCTGTTGGCCAATGCTTCTATGGAGACTCTTTCTAACCAGCA
GTTGCAGGCTTTGGACAGATCCCAACAAAGTACTTCCAGTCCCCTATCTG
TACCCATCTTCCTGTAGGAGGCATTAATTACATTGTAGCTCTTATACCTT
TTCTAGTAACTGGGCTATATGAGCCAGGGCTGATATTTAACATATAGAGT
GGTGCTTGATTACTATACCTGTTACAAAATATAATTACATAATTAGTGTG
AAGTGTTACAGTTCCTATTAAAGTTCATAAAAATCTTTAACGTTTCTTTG
AACCCTATATACTAGGTGAGAACATTTTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCTTACCCTCCTTTTCTGAGT
AAACTCTTTTGCTTACCTATGGGTTTTATTTACCCTGGTATCCTGAGGAG
AATTTAGATGTCCTTGATTCCAAGGTGATGTAGTACAAAATTAATATCCT
ATGCTTATTGGAAATCTTTCTGAACTACTGATCATAATTCACAAATACAT
TCCCTAACACTGTGAAGAATCACAGGGAAGCATACAGCTTTTCTTCTTAC
CATTCTGGCCACTGGGTGAGACACCAGATATTTTACATAATTTATTATGA
TCCTACATGTGACTATAGTTCAGGAAGGTGCTTTCTCATTCTCTTCTCTG
GACACAGTCCTCAGATATAAAGAGAAAATGGAGTTATTTCATTTGCTTGC
TAGACTGTGATATATGATCTAGAACTTTAGGGACCATTTCTCTATTCAGT
TATGCCTCCTCACGGAATGTACTTTCTCCCTGCTTTGGGCCTAANTGAGG
GCCCGTCCTGGTAGCCCCTTTCTCTCTTTAAGGAAAACGGCTGGGTTTGT
TTTTTTCCCCTTGGTCCCTAAACCAAAGCCCCCACCGGGATTGGCTTTTA
CCCTATAATTTAATTTTTTATAGGAACGCCCCCCCTTACATTTTTTCTCT
CGTTTCTTGCTGTCCCTTATTTTTCTTCCCCCTTACTCTCTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_b18.b1 MSMg01no356_b18.b1 CHROMAT_FILE:
MSMg01no356_b18.b1 PHD_FILE: MSMg01no356_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:44 2005
         (532 letters)



>mm_chr9_38275063_38275992
          Length = 930

 Score =  963 bits (498), Expect = 0.0
 Identities = 520/528 (98%), Gaps = 2/528 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatattttttaatgggcaagataatgtctttttttttgcaatcctttatttgaa 64
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 205 gaattctatattttttaatgggcaagataatgtcttttttt--gcaatcctttatttgaa 262

                                                                       
Query: 65  gcactaactatccatattcactttgaagataacttgagatataacatttgacattttcag 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gcactaagtatccatattcactttgaagataacttgagatataacatttgacattttcag 322

                                                                       
Query: 125 aggatggatgtggttggcctttatcaggttaaactggctatttattcaaagattaatgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aggatggatgtggttggcctttatcaggttaaactggctatttattcaaagattaatgaa 382

                                                                       
Query: 185 ctattatggcaaatacagataacagctattgtggtggaccaatatgatgtggatagctag 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctattatggcaaatacagataaccgctattgtggtggaccaatatgatgtggatagctag 442

                                                                       
Query: 245 ggttgttgtccgaggacttccagtatttctcccaaagtccaattaagaaaattgtaaatg 304
           ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 443 ggttgttgtccaaggacttccagtatttctcccaaaatccaattaagaaaattgtaaatg 502

                                                                       
Query: 305 gatgggctcttattggcaataagacctacctttggggtcataaaaaacatctacatcctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gatgggctcttattggcaataagacctacctttggggtcataaaaaacatctacatcctt 562

                                                                       
Query: 365 ttctgttggccaatgcttctatggagactctttctaaccagcagttgcaggctttggaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 563 ttctgttggccaatgcttctatggagactctttctaaccagcagttgcaggctttagaca 622

                                                                       
Query: 425 gatcccaacaaagtacttccagtcccctatctgtacccatcttcctgtaggaggcattaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gatcccaacaaagtacttccagtcccctatctgtacccatcttcctgtaggaggcattaa 682

                                                           
Query: 485 ttacattgtagctcttataccttttctagtaactgggctatatgagcc 532
           ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttacattgtaggtcttataccttttctagtaactgggctatatgagcc 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 930
Length adjustment: 10
Effective length of query: 522
Effective length of database: 920
Effective search space:   480240
Effective search space used:   480240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no356_b18.g1 MSMg01no356_b18.g1 CHROMAT_FILE:
MSMg01no356_b18.g1 PHD_FILE: MSMg01no356_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:44 2005
         (423 letters)



>mm_chr9_38303072_38303894
          Length = 823

 Score =  779 bits (403), Expect = 0.0
 Identities = 418/423 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagcttaccctccttttctgagtaaactcttttgcttacctatgggttttatttaccct 60
           |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 623 caagtttacactccttttctgagtaaactcttttgcttacctacgggttttatttaccct 564

                                                                       
Query: 61  ggtatcctgaggagaatttagatgtccttgattccaaggtgatgtagtacaaaattaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggtatcctgaggagaatttagatgtccttgattccaaggtgatgtagtacaaaattaata 504

                                                                       
Query: 121 tcctatgcttattggaaatctttctgaactactgatcataattcacaaatacattcccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcctatgcttattggaaatctttctgaactactgatcataattcacaaatacattcccta 444

                                                                       
Query: 181 acactgtgaagaatcacagggaagcatacagcttttcttcttaccattctggccactggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 443 acactgtgaagaatcacagggaagcatacagcttttcttcttaccattctggccactgga 384

                                                                       
Query: 241 tgagacaccagatattttacataatttattatgatcctacatgtgactatagttcaggaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 383 tgagacaccagatattttacataatttattatgatcctacatgtgactatggttcaggaa 324

                                                                       
Query: 301 ggtgctttctcattctcttctctggacacagtcctcagatataaagagaaaatggagtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggtgctttctcattctcttctctggacacagtcctcagatataaagagaaaatggagtta 264

                                                                       
Query: 361 tttcatttgcttgctagactgtgatatatgatctagaactttagggaccatttctctatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttcatttgcttgctagactgtgatatatgatctagaactttagggaccatttctctatt 204

              
Query: 421 cag 423
           |||
Sbjct: 203 cag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)