Query= MSMg01no356_b18.b1 MSMg01no356_b18.b1 CHROMAT_FILE:
MSMg01no356_b18.b1 PHD_FILE: MSMg01no356_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:44 2005
(532 letters)
>mm_chr9_38275063_38275992
Length = 930
Score = 963 bits (498), Expect = 0.0
Identities = 520/528 (98%), Gaps = 2/528 (0%)
Strand = Plus / Plus
Query: 5 gaattctatattttttaatgggcaagataatgtctttttttttgcaatcctttatttgaa 64
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattctatattttttaatgggcaagataatgtcttttttt--gcaatcctttatttgaa 262
Query: 65 gcactaactatccatattcactttgaagataacttgagatataacatttgacattttcag 124
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gcactaagtatccatattcactttgaagataacttgagatataacatttgacattttcag 322
Query: 125 aggatggatgtggttggcctttatcaggttaaactggctatttattcaaagattaatgaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aggatggatgtggttggcctttatcaggttaaactggctatttattcaaagattaatgaa 382
Query: 185 ctattatggcaaatacagataacagctattgtggtggaccaatatgatgtggatagctag 244
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctattatggcaaatacagataaccgctattgtggtggaccaatatgatgtggatagctag 442
Query: 245 ggttgttgtccgaggacttccagtatttctcccaaagtccaattaagaaaattgtaaatg 304
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 443 ggttgttgtccaaggacttccagtatttctcccaaaatccaattaagaaaattgtaaatg 502
Query: 305 gatgggctcttattggcaataagacctacctttggggtcataaaaaacatctacatcctt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gatgggctcttattggcaataagacctacctttggggtcataaaaaacatctacatcctt 562
Query: 365 ttctgttggccaatgcttctatggagactctttctaaccagcagttgcaggctttggaca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 563 ttctgttggccaatgcttctatggagactctttctaaccagcagttgcaggctttagaca 622
Query: 425 gatcccaacaaagtacttccagtcccctatctgtacccatcttcctgtaggaggcattaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gatcccaacaaagtacttccagtcccctatctgtacccatcttcctgtaggaggcattaa 682
Query: 485 ttacattgtagctcttataccttttctagtaactgggctatatgagcc 532
||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttacattgtaggtcttataccttttctagtaactgggctatatgagcc 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 930
Length adjustment: 10
Effective length of query: 522
Effective length of database: 920
Effective search space: 480240
Effective search space used: 480240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_b18.g1 MSMg01no356_b18.g1 CHROMAT_FILE:
MSMg01no356_b18.g1 PHD_FILE: MSMg01no356_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:44 2005
(423 letters)
>mm_chr9_38303072_38303894
Length = 823
Score = 779 bits (403), Expect = 0.0
Identities = 418/423 (98%)
Strand = Plus / Minus
Query: 1 caagcttaccctccttttctgagtaaactcttttgcttacctatgggttttatttaccct 60
|||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 623 caagtttacactccttttctgagtaaactcttttgcttacctacgggttttatttaccct 564
Query: 61 ggtatcctgaggagaatttagatgtccttgattccaaggtgatgtagtacaaaattaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggtatcctgaggagaatttagatgtccttgattccaaggtgatgtagtacaaaattaata 504
Query: 121 tcctatgcttattggaaatctttctgaactactgatcataattcacaaatacattcccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcctatgcttattggaaatctttctgaactactgatcataattcacaaatacattcccta 444
Query: 181 acactgtgaagaatcacagggaagcatacagcttttcttcttaccattctggccactggg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acactgtgaagaatcacagggaagcatacagcttttcttcttaccattctggccactgga 384
Query: 241 tgagacaccagatattttacataatttattatgatcctacatgtgactatagttcaggaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 383 tgagacaccagatattttacataatttattatgatcctacatgtgactatggttcaggaa 324
Query: 301 ggtgctttctcattctcttctctggacacagtcctcagatataaagagaaaatggagtta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggtgctttctcattctcttctctggacacagtcctcagatataaagagaaaatggagtta 264
Query: 361 tttcatttgcttgctagactgtgatatatgatctagaactttagggaccatttctctatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttcatttgcttgctagactgtgatatatgatctagaactttagggaccatttctctatt 204
Query: 421 cag 423
|||
Sbjct: 203 cag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|