Query= MSMg01no356_c19.b1 MSMg01no356_c19.b1 CHROMAT_FILE:
MSMg01no356_c19.b1 PHD_FILE: MSMg01no356_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:49 2005
(604 letters)
>mm_chr9_29922729_29923732
Length = 1004
Score = 988 bits (511), Expect = 0.0
Identities = 529/535 (98%), Gaps = 1/535 (0%)
Strand = Plus / Minus
Query: 5 gaattcttttgctctctctgtgcatctctgctgttgattaaatggtgccatcctggggct 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gaattcttttgctccctctgtgcatctctgctgttgattaaatggtgccatcctggggct 476
Query: 65 tgttcagtttatgaagcagtgttaggaaacaaagtgttaggtctccacataatctcagtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tgttcagtttatgaagcagtgttaggaaacaaagtgttaggtctccacataatctcagtt 416
Query: 125 tttactctccaaacaggtactagagcagggcctaactcaaggaaggcaacatagtgatga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tttactctccaaacaggtactagagcagggcctaactcaaggaaggcaacatagtgatga 356
Query: 185 aaccagcctttccagagaattatggctccggtctgagttagtatttatcttgagaaaaga 244
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 355 aaccagcctttccagagaattatggctccggtctgagttagtgtttatcttgagaaaaga 296
Query: 245 ttttctagaagtgaaagggtagtgaatgggagaccctataggttagctattcagaaaaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttttctagaagtgaaagggtagtgaatgggagaccctataggttagctattcagaaaaac 236
Query: 305 tcaaataactgtaagaatttttttgttttaatttttaaa-tttttattagatattttctt 363
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 235 tcaaataactgtaagaatttttttgttttaatttttaaattttttattaggtattttctt 176
Query: 364 catttacatttcaaatgctatcccaaaagttccccattacccccgccccactccctttcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 catttacatttcaaatgctatcccaaaagttccccattacccccgccccactccctttcc 116
Query: 424 cacccactcccactttttggccctggcggtcccctgtactgaggcatagaaagtttgcaa 483
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 115 cacccactcccactttttggccctggcgttcccctgtactgaggcatagaaagtttgcaa 56
Query: 484 gaccaatgggcctctctttccactgatggtttccatctccagcgttgcctcactt 538
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 55 gaccaatgggcctctctttccactgatggtttccatctccagcgttccctcactt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_c19.g1 MSMg01no356_c19.g1 CHROMAT_FILE:
MSMg01no356_c19.g1 PHD_FILE: MSMg01no356_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:49 2005
(484 letters)
>mm_chr9_29808906_29809789
Length = 884
Score = 845 bits (437), Expect = 0.0
Identities = 466/483 (96%), Gaps = 12/483 (2%)
Strand = Plus / Plus
Query: 1 ttttagagagctgagtgggttactaggtacgtgaaacccttcttgtcattctaaatgaaa 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttagagagctgagtgggtttttaggtacgtgaaacccttcttgtcattctaaatgaaa 260
Query: 61 tcagttgaaacttggggtgtggctaacttgaagtcagccttgggtgttggatctgtctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagttgaaacttggggtgtggctaacttgaagtcagccttgggtgttggatctgtctct 320
Query: 121 actgccttcttcatttatatctggtacccatgtctgccttctctttattggcttcccagc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 actgccttcttcatttatatctggtacccatgtctgccttctctttattggcttcctagc 380
Query: 181 ctctcgccattgggcagcaggtacaagtagcatcagggaaattagttctgtaacctgccc 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcaccattgggcagcaggtacaagtagcatcagggaaattagttctgtaacctgccc 440
Query: 241 atgcagccccagcagcaggacagagctgatagtgagatctctgtctgtctgtctgtctgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcagccccagcagcaggacagagctgatagtgagatctctgtctgtctgtctgtctgt 500
Query: 301 ctgtctgtctctctctctctctctctctctttcgttgtttccttttgcacaagatatggt 360
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 ctgtctgtctctctctctctca------------ttgtttccttttgcacaagatatggt 548
Query: 361 tcctccctccacctcttccagctgtattcccagcccattgaagaaagagccgtttaaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tcctccctccacctcttccagctgtattcccagcccattgaagaaagagccgtttaaatt 608
Query: 421 tatactgttgaatttctgtaggataccgaaatatttttgaagttaatggaggagctgtga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tatactgttgaatttctgtaggataccgaaatatttttgaagttaatggaggagctgtga 668
Query: 481 ata 483
|||
Sbjct: 669 ata 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
