Query= MSMg01no356_l08.b1 MSMg01no356_l08.b1 CHROMAT_FILE:
MSMg01no356_l08.b1 PHD_FILE: MSMg01no356_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:31 2005
(401 letters)
>mm_chr9_103963065_103963864
Length = 800
Score = 729 bits (377), Expect = 0.0
Identities = 392/397 (98%), Gaps = 1/397 (0%)
Strand = Plus / Plus
Query: 5 gaattctcgtgttatctcgtgaaactgtattgttcttctaaaataccttctttatcttaa 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcgtgttacct-gtgaaactgtattgttcttctaaaataccttctttatcttaa 263
Query: 65 cgtgtagtcaatgtctacacctaatggtttaaatggtaaagatcaaagggaaatggcatt 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgtgtagtcaaggtctacacctaatggtttaaatggtaaagatcaaagggaaatggcatt 323
Query: 125 gttttcccttgttttgttagtatataaagacaatgaaataagctcacggcctctgcccaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttttcccttgttttgttagtatataaagacaatgaaataagctcacggcctctgcccaa 383
Query: 185 aaggaaggatatctgcattggggaatatctgttgtctgccaaggattctaagaagcagta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaggaaggatatctgcattggggaatatctgttgtctgccaaggattctaagaagcagta 443
Query: 245 ctcatctgctctattattgtgtataagtgtgtgtttatgtgtgcacacgtgcacactgtg 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 ctcatctgctctattattgtgtataagtgtgtatttatgtgtgcacacgtgcacactgtg 503
Query: 305 gtatatacctatataacacattaaagtttttgtgtgtttgatctttactgcacacatgga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtatatacctatataacacattaaagtttttgtgtgtttgatctttactgcacacatgga 563
Query: 365 cctgtggttgttagacatctgtctgcagccctctggt 401
||||||||||||||||||||||| |||||||||||||
Sbjct: 564 cctgtggttgttagacatctgtcagcagccctctggt 600
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 800
Length adjustment: 9
Effective length of query: 392
Effective length of database: 791
Effective search space: 310072
Effective search space used: 310072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_l08.g1 MSMg01no356_l08.g1 CHROMAT_FILE:
MSMg01no356_l08.g1 PHD_FILE: MSMg01no356_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:31 2005
(390 letters)
>mm_chr9_104103948_104104738
Length = 791
Score = 731 bits (378), Expect = 0.0
Identities = 388/392 (98%), Gaps = 3/392 (0%)
Strand = Plus / Minus
Query: 1 acttcatgtctcctaaaagctgctataggagtctctgtaatgac--aagaatatcttccc 58
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct: 591 acttcatgtctcctaaaagctgctataggagtctctgtaatgacataagaatgtctt-cc 533
Query: 59 ctccaggaagttagagcagtgctacaaatccgcatgtaaagtaaaaccctgaagaattgg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ctccaggaagttagagcagtgctacaaatccgcatgtaaagtaaaaccctgaagaattgg 473
Query: 119 agtgattgacaggcaggcagctgcaattgtttctttcatatctcagaactgatatttctt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 agtgattgacaggcaggcagctgcaattgtttctttcatatctcagaactgatatttctt 413
Query: 179 aggagctgtccgttgattttgtgaagctgtctctggattttttatccactgttgactgaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aggagctgtccgttgattttgtgaagctgtctctggattttttatccactgttgactgaa 353
Query: 239 ttgtcatttatttcatcagtgcactgataaactcgagcgggataggctgatcctcttcct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttgtcatttatttcatcagtgcactgataaactcgagcgggataggctgatcctcttcct 293
Query: 299 caacaagctgatccttaataaggtacagtatccctgtgagttactgtcacttaataaggt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 caacaagctgatccttaataaggtacagtatccctgtgagttactgtcacttaataaggt 233
Query: 359 acagtatccctgtgagtcactgtcacttaata 390
||||||||||||||||||||||||||||||||
Sbjct: 232 acagtatccctgtgagtcactgtcacttaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 7
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 791
Length adjustment: 9
Effective length of query: 381
Effective length of database: 782
Effective search space: 297942
Effective search space used: 297942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
