BAC Information

Click to search

BAC

Clone NameMSMg01-356P11
Chromosome9 (Build37)
Map Location 27,044,349 - 27,044,688
singlet/doubletsinglet
Overlap genenone
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3
Downstream geneIgsf9b, Spata19, LOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356P11.T7 (MSMg01no356_p11.b1)MSMg01-356P11.TJ (MSMg01no356_p11.g1)
ACCAG466981AG466982
length753911
length of high quality
(start - end)
340 (66 - 405)---
definitionCHROMAT_FILE: MSMg01no356_p11.b1 PHD_FILE: MSMg01no356_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:50 2005CHROMAT_FILE: MSMg01no356_p11.g1 PHD_FILE: MSMg01no356_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAATTCT
GGGATATACCAGGATTGGACACTTGCTGGGACAGAGGAAGTCAGTTGCAT
GAAACTGAAGAACAGATAGATAACCAGCTATGTGATGGGACTTAGAATAG
AATAAACGAGATAATTAAATTATGAACTAGTTGGGGAATGGGCCCAAGTT
TATGGCCTAAGCATTTATTCATAATTATAATTAAGTCTCAGAAGTATTAT
TTCAGGGAACAAAGAAGCCAAGTGTAAAAGCCTATGGTTACACACAGTAA
AGACTTTAAGAGGTTGGACTTATGTGGAAGACTTATCTAGGTTAGCAACA
TAGGGTAATGGGTGGATTTATTTCTTCTCTCTCTTTAACACTCAGATGCA
GGGTGACCCCCCCTCCTCTATCTTGTGCTCTCAACATATGTACCATCATG
TGCAACAGAGACAACTGGACTGTGGGTCCGTGTTCTGCCCTGCCACTGGG
GTGTGGGATACCTAGCAGAATGCAGAGGGGCCAGATGTAGATTTGTGCTC
CGCCCTGCCACTGGGGTGTGAAGTGCTTGGCTGTGTCTCCCTGTACCAAT
ATCTTCAGGAAGCTCTGAGATACTACTCGAGGCTGGCACAACATAGCCTG
AGATGAGGGGCCAAAGCTGGGGTTCCCTGACTCCTGTACACTCTGACCCT
CCTGGCGTTGCCATTCTTATAACTCTTCAAGGAGGTATTTCGGCTTCCTT
GTG
ATCTGCCTGCGTTCGCGCGGTTCCCCGCCCTCTATATCCTTTTATGCAAC
TCATTCGAGGATCCCGCGGACTTCGTACGGTTCTTGCCTTTATATTCTTT
CGTCGCTTATTGCCTCCTCTTAATGATTTTTTGCCAGAGGTGTCCTCTGG
TGCATGAGAGCTATGACTAGCTCGACGTCAGGCATGACAGGTCCCCCGTT
TCTCTTTACGCCGCTATCACAACCTAACATATGACCATTATTCGTAATCG
CACTGTCCCTCTTGCCAGTGTCATCGTTGGACCTTGCGAGACCATCCCCT
AGACGGCTATCACCGCTGTCTGGTATTTTTCCGCTTTCCCATTTGCCCGT
AGTTTAAACAATGTCTGCTCTCTCATTTCATACTGTTTTAGCATTGCCTG
TTTTCTATTCCACCCCGCTTGATTCTAGAAGACTGTCCCATCATTGTCCA
CGCTATCAAACTTCACCACTCCTCCATTTCCGCTATATGTGTACTAACCC
ACGCCTTACTGTCCCATTATAACCTTAGGGGTCCCCTTGTGTTATTCCTT
GCTATTCCTCCTTTCTCTCCTCTCTGCTCACTCCCCTTTTATTCTCACAC
TTCGCACACCCTTTCACCCCCTCCACCTTCTTTTTGTAATATTGCTCCCA
CAATAACATTTCTCTGACCCTTACACTTACCCTTACATTCCTGTCTGCAT
CCTCCTTTGCCCTTTTACCTTTGTCCCTTTCCCACCTCTTTTTCCTCCCC
CTCCATTTTTTACCCACCTGTTTATCATCCCTTTTGTAACCCATCGCCTT
TCATCCCATAACTTGTTCACCTTTATATTGACCTCCCGTTTTCTTTTAGC
TTTTTTTCACCCTAGGCTATTACATTATACGCACACCTTAGATACACATT
CGCCCTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_p11.b1 MSMg01no356_p11.b1 CHROMAT_FILE:
MSMg01no356_p11.b1 PHD_FILE: MSMg01no356_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:50 2005
         (340 letters)



>mm_chr9_27044149_27044888
          Length = 740

 Score =  650 bits (336), Expect = 0.0
 Identities = 339/340 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggacacttgctgggacagaggaagtcagttgcatgaaactgaagaacagatagataacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggacacttgctgggacagaggaagtcagttgcatgaaactgaagaacagatagataacc 260

                                                                       
Query: 61  agctatgtgatgggacttagaatagaataaacgagataattaaattatgaactagttggg 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccatgtgatgggacttagaatagaataaacgagataattaaattatgaactagttggg 320

                                                                       
Query: 121 gaatgggcccaagtttatggcctaagcatttattcataattataattaagtctcagaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatgggcccaagtttatggcctaagcatttattcataattataattaagtctcagaagt 380

                                                                       
Query: 181 attatttcagggaacaaagaagccaagtgtaaaagcctatggttacacacagtaaagact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attatttcagggaacaaagaagccaagtgtaaaagcctatggttacacacagtaaagact 440

                                                                       
Query: 241 ttaagaggttggacttatgtggaagacttatctaggttagcaacatagggtaatgggtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaagaggttggacttatgtggaagacttatctaggttagcaacatagggtaatgggtgg 500

                                                   
Query: 301 atttatttcttctctctctttaacactcagatgcagggtg 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttatttcttctctctctttaacactcagatgcagggtg 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)