TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCAACGATGAACCATTCAGAGTGAAATAGAGAGAGAAAGACAG
AAATGGTGCCTAGAGCCAAAGCTATTTGAAAAAAAAATCCCAAAGCCACT
GGATGGAAGGTCACCTTGCCTGTGGGGAGTTGAACTCTCCTGTCCCAAGC
AGCTAGGCTGGCCCTGATCCTTGGTCCCCACCACTTCCATCACCTGTGAC
AAAAAAAATAAAAAAATACTCATGGCATTTGGTGACCTCCGTGGCATCTG
TGTCTCAGGGCCTCTGTGGTCTGTGCCTCTCACCCCTATTCCCTCCATGC
AGAGAAGGCCAGGCAGGTTGAGGGAAGAGTGAGGAAGAGGGCATCAAGCA
GGGCCAAAACAAAAGAAAAATGTCGAAGGGGGGGCAAGGCCCCCGGGACG
GGCTTCCTGCGAGATCCCGAGTTTCATTAAATATAGAAAGGTGGAATGAA
AAAATAATATTCCCTCATTGTTAGAGTTTCAAAGTCAGAAGCCAGCCTTG
ATTTCAAAGAACTCGTGTGTAATGCGATGCGTGACTTTTCTCCCGTCTCT
CTTTTTATAGGTAAGTGACATTTCATTCTGCTCATCCCCAAGGNAAAGCT
GGATGTTTTAAAAGCGGAAAAAAAAGTGTGTGTCTAAAAAAAAGGGGAAT
GTGGAAAAAAGTGTAAGTCAAGGNTCTTTCTAGTTAG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTTCTGCTCAAGCATGTCT
AGGATTTGCTTGATTGCCACGTGATCCACAACTACCAACTTCTCTGCTAC
TGCCTCGATTTTGTCAGTTTGAGACAAACTGGGATCATCTGGGAAGAGCA
AACCCTCACCTAGCTCTTCTCTCCACTGTTTTTGCCTGTATACTAGACCT
TAGGGATGTTTTGATGGTTTGTATGGGAGAACTCAGCCCATTGTAAGAGG
TCCTGGGTCATTCCCTGCCTTAAACTCCTGCCATGACCTCCCTGGGTGAT
GGACTATAACCTGTAAACTAATATATACCCTTTGCTTCCTTCCCCTTCCC
TCCCTTCCTTTCCCTTCCCTTCTCAAGTTGCTTTTGGTCAGTGTGTTCAT
TACAGCACTAGAGAAGCAAAGTAGAGCACTCTCTGAATGCAACACGGGGA
GAAAATAGAAATTGGATTCGCTCTTGGGATGTTAACAGAAAAAAAGCCTG
CCTTTGGGACAAGGATCTCTCCCCCAGCCCTAAGAATTTCTCTTCCAAGC
ACCCCCATGGAGGCCATGAAAATTTTGTCCCCTCCCACTGAAAAGATTCG
TTCTACACACTTCCCCAAACGGACGCGCATCTTTTTGGGTACGCTCTCGT
TATCTCCTCCTCCTAAACTCCTTTTACCAATTTTTTATCCGTTTCGTTTN

Query= MSMg01no357_a10.b1 MSMg01no357_a10.b1 CHROMAT_FILE:
MSMg01no357_a10.b1 PHD_FILE: MSMg01no357_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:55 2005
         (566 letters)



>mm_chr9_29481785_29482750
          Length = 966

 Score = 1060 bits (548), Expect = 0.0
 Identities = 559/564 (99%), Gaps = 4/564 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattcaacgatgaaccattcagagtgaaat--agagagagaaagacagaaatggt 62
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 766 gaattcattcaacgatgaaccattcagagtgaaatagagagagagaaagacagaaattgt 707

                                                                       
Query: 63  gcctagagccaaagctatttgaaaaaaaaatcccaaagccactggatggaaggtcacctt 122
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 706 gcctagagccaaagctatttg--aaaaaaatcccaaagccactggatggaaggtcacctt 649

                                                                       
Query: 123 gcctgtggggagttgaactctcctgtcccaagcagctaggctggccctgatccttggtcc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gcctgtggggagttgaactctcctgtcccaagcagctaggctggccctgatccttggtcc 589

                                                                       
Query: 183 ccaccacttccatcacctgtgacaaaaaaaataaaaaaatactcatggcatttggtgacc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ccaccacttccatcacctgtgacaaaaaaaataaaaaaatactcatggcatttggtgacc 529

                                                                       
Query: 243 tccgtggcatctgtgtctcagggcctctgtggtctgtgcctctcacccctattccctcca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tccgtggcatctgtgtctcagggcctctgtggtctgtgcctctcacccctattccctcca 469

                                                                       
Query: 303 tgcagagaaggccaggcaggttgagggaagagtgaggaagagggcatcaagcagggccaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgcagagaaggccaggcaggttgagggaagagtgaggaagagggcatcaagcagggccaa 409

                                                                       
Query: 363 aacaaaagaaaaatgtcgaagggggggcaaggcccccgggacgggcttcctgcgagatcc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aacaaaagaaaaatgtcgaagggggggcaaggcccccgggacgggcttcctgcgagatcc 349

                                                                       
Query: 423 cgagtttcattaaatatagaaaggtggaatgaaaaaataatattccctcattgttagagt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cgagtttcattaaatatagaaaggtggaatgaaaaaataatattccctcattgttagagt 289

                                                                       
Query: 483 ttcaaagtcagaagccagccttgatttcaaagaactcgtgtgtaatgcgatgcgtgactt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttcaaagtcagaagccagccttgatttcaaagaactcgtgtgtaatgcgatgcgtgactt 229

                                   
Query: 543 ttctcccgtctctctttttatagg 566
           ||||||||||||||||||||||||
Sbjct: 228 ttctcccgtctctctttttatagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)