Query= MSMg01no357_g24.b1 MSMg01no357_g24.b1 CHROMAT_FILE:
MSMg01no357_g24.b1 PHD_FILE: MSMg01no357_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:26 2005
(470 letters)
>mm_chr9_82890686_82891557
Length = 872
Score = 833 bits (431), Expect = 0.0
Identities = 459/469 (97%), Gaps = 3/469 (0%)
Strand = Plus / Minus
Query: 5 gaattctctctgctgtctg-aataaataaagtgtgtaaagtattgcttttcaagaaactg 63
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 848 gaattctctctgctgtctgaaataaataaagtgtgcaaagtattgcttttcaagaaactg 789
Query: 64 gatatcaggttggacttggtagctcatgtctgcaattgcaacacttgggagaaccagggc 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gatatcaggttggacttggtagctcatgtctgcaattgcaacacttgggagaaccagggg 729
Query: 124 agaagctagcctgcctgggctacctagtgagtgagaagctatctcaaaagagaaaagaag 183
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 agaggctagcctgcctgggctacctagtgagtgagaagctatctcaaaagagaaaagaag 669
Query: 184 aaagcagaaagacagcaggcaatgaatgaccaggacttacaagaccaaatccaaatgaga 243
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 668 aaagcagaaagacagcaggcaatgaatgaccacgacttacaagaccaaatccaaatgaga 609
Query: 244 tgaacagcaacattgtgttaagttgtgacccagaaactatttccagactgtgtcactgag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tgaacagcaacattgtgttaagttgtgacccagaaactatttccagactgtgtcactgag 549
Query: 304 cagaggaatccaaatggatactggtgtctccttgagtaaaggctaatgggggatccaggg 363
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 548 cagaggaatccaaatggatactggtgtctccttgagtaaaggctagtgggggatccaggg 489
Query: 364 gatgtgctaaagtctgcagaacatgaaactgtataaaaagaggttgtctacatataatta 423
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 488 gatgtgataaagtctgcagaacatggaactgtataaaaagaggttgtctacatataatta 429
Query: 424 taaaactcttttaggcaaaaaa--aattatttaaatttcatatatctgt 470
|||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 428 taaaactcttttaggcaaaaaattaattatttaaatttcatatatctgt 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 872
Length adjustment: 10
Effective length of query: 460
Effective length of database: 862
Effective search space: 396520
Effective search space used: 396520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_g24.g1 MSMg01no357_g24.g1 CHROMAT_FILE:
MSMg01no357_g24.g1 PHD_FILE: MSMg01no357_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:26 2005
(390 letters)
>mm_chr9_82720512_82721301
Length = 790
Score = 729 bits (377), Expect = 0.0
Identities = 386/389 (99%)
Strand = Plus / Plus
Query: 1 tcagaacataattagatggaaattgatgattctattagaataacaagtaaaataatttgg 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagaacataattagaaggaaattgatgattctattagaataacaagtaaaataatttgg 260
Query: 61 atgcatatttttgattcagacaagttgatactgttaccttgttgagaatggttgctagtg 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcatatttttgattcagtcaagttgatactgttaccttgttgagaatggttgctagtg 320
Query: 121 gctgagccttaactctgaggaggaagctgaacagatagatacattcattctcctctgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgagccttaactctgaggaggaagctgaacagatagatacattcattctcctctgaaa 380
Query: 181 aactcatgaatcatgaaggcatatctacttttatttattacatagctctgtcactaagaa 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactcatgaatcatggaggcatatctacttttatttattacatagctctgtcactaagaa 440
Query: 241 ccaatctgcccatcttttaaaattattttcatctattttctgcattctgaattcatctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaatctgcccatcttttaaaattattttcatctattttctgcattctgaattcatctct 500
Query: 301 tgacaagatgagttttaaagagatctttctacatgtttaaagttttatttaattatgaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacaagatgagttttaaagagatctttctacatgtttaaagttttatttaattatgaat 560
Query: 361 tgtttaaactgtttcttttttctttttag 389
|||||||||||||||||||||||||||||
Sbjct: 561 tgtttaaactgtttcttttttctttttag 589
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space: 297561
Effective search space used: 297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
