BAC Information

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BAC

Clone NameMSMg01-357N05
Chromosome9 (Build37)
Map Location 45,918,208 - 45,918,620
singlet/doubletsinglet
Overlap geneBC033915
Upstream geneScn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik
Downstream geneApoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722, EG667890, 2900052N01Rik, D930036J05
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357N05.T7 (MSMg01no357_n05.b1)MSMg01-357N05.TJ (MSMg01no357_n05.g1)
ACCAG467631AG467632
length781874
length of high quality
(start - end)
415 (45 - 459)69 (73 - 141)
definitionCHROMAT_FILE: MSMg01no357_n05.b1 PHD_FILE: MSMg01no357_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:55 2005CHROMAT_FILE: MSMg01no357_n05.g1 PHD_FILE: MSMg01no357_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTCCTCTTTCCTGCCTGTATGTGTGCGCGGCACTAGCGTGCATGC
ACATATTAAGATTCATCTTGTCCCTTTATAATCTGAGAAGTGGGTGTAAT
AAGTACCCTGTAAGAATTAGTCACAAGCTATTGTCACTAGCTACTGCTAT
GCTCCTCGAATGGAACAGCAATTTCCCAAGTTCATTACAGAGGAAGACAG
TTGCTTCCGTGTTGGGCAGGTGACATGCAACCACATGGTGTGGTTACTGG
TTTGAACTGGATTTCTCTCCTCATCAAGCTCAAAAATCCATGTACCTTCA
ATAAAGACAAAAATTTCTCAAAAAAAAAACCTGACTGATAGATGACAAGA
CAATTATTTTTGATTGCCACTTAAAATCCACAGAAACAAATAAAACAGCA
GGTGACAGTGTTAGGAGGGGAGGGCAGAATATTATATGGGAGGACAGCTT
GTTTTACTAGATGAGAAAACTTCTATACATTGATTGCTTTGGGTTAATGT
GTTTTACCTTTTTGAAACATTTATACTTTAAACATGGTTAATCATTGGGT
TTTTTTTTATAGCTCCATCCGGCGTATCATTGCCTGTCCCCCGATTTTTC
GCCCCCCTTACCTTCCATTCTCCGCCAACTCCCTTTTGCCGCCATATGAA
ATTTTTTTCCAATCCATAATTCCCCCCTTCTCTCTAATATTCACTTTAAT
TCTTTCCTCCTAGCTTTATCCTTTCCTCTTN
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGGGACAACTGAGGCAGGATGAGGCCT
CACCCTAGGCCAGACTAACCTTCCTTCTATCCTCTCTACANNCCTGGATT
CTAGATTCTNTCCACCCAGNGAGTAACGGGTTGTCCCAACTTGGNNNAAG
AAGCATGCCATGAAGCTCTTTTCTAAGGGCTGGGTAATGACAGCGAGAGA
CGAGGGAACGAGGAAGGCAAAGGTGAGGAAACAAGAAACGAGCGAAACGC
GGGAGCGGGANTCACAATAATTTTTCTCCATGCCCCTAACCCAAAANNCC
CNAAAAAAGAAAAACCCCCAAAAACCCCCCCCCCCCTCTTTTTTTTCCCC
CNNGGCCCNNNTACCATTTCTTTTTTTAAAAAAAAAAAAAATTTCTCCCC
CNAAAAAAAAACCCTCCCCCATTTTTCTCTTCTTTTTTTTTGGGGGAAAA
AAAAAAAATTGTTTTAAAAAAAAAATAACCCCTCCCCCCCCCCTTTTTTT
TATTTCNNTACCCCTAATATTTTTTTTTCTTCTCTTTTTTTCNNTTTTTT
TCCTCCTAAAAAATTTTTTTTTTTTTTTTTTTTCTCCTCATTATTTCTNN
CNCTCCCCCCCCCCCCCCTANNTNTTCCCTTTTTTTCTTCTTTTTTCTTT
CTTTCCCTTCTCCCCTCTTTTCTTTTTTTTTTTTTCTTCTCCTTCTCCCC
CCCTTTTCTTTANNCCCCNCCNTTTTTCCTTTTCTNCTTCTCTTTCTTTT
TCTTTCTTCCTCTTTTTTTCCTCTNTCTTCTTTTTTTTCTTTTTNCCTTC
TTCTTTGTTTTATTGAATATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_n05.b1 MSMg01no357_n05.b1 CHROMAT_FILE:
MSMg01no357_n05.b1 PHD_FILE: MSMg01no357_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:55 2005
         (415 letters)



>mm_chr9_45918004_45918820
          Length = 817

 Score =  779 bits (403), Expect = 0.0
 Identities = 410/413 (99%), Gaps = 2/413 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtcctctttcctgcctgtatgtgtgcgcggcactagcgtgcatgcacatatta 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaattctgtccactttcctgcctgtatgtgtgcgcggcactagcgtgcatgcacatatta 558

                                                                       
Query: 65  agattcatcttgtccctttataatctgagaagtgggtgtaataagtaccctgtaagaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agattcatcttgtccctttataatctgagaagtgggtgtaataagtaccctgtaagaatt 498

                                                                       
Query: 125 agtcacaagctattgtcactagctactgctatgctcctcgaatggaacagcaatttccca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agtcacaagctattgtcactagctactgctatgctcctcgaatggaacagcaatttccca 438

                                                                       
Query: 185 agttcattacagaggaagacagttgcttccgtgttgggcaggtgacatgcaaccacatgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agttcattacagaggaagacagttgcttccgtgttgggcaggtgacatgcaaccacatgg 378

                                                                       
Query: 245 tgtggttactggtttgaactggatttctctcctcatcaagctcaaaaatccatgtacctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgtggttactggtttgaactggatttctctcctcatcaagctcaaaaatccatgtacctt 318

                                                                       
Query: 305 caataaagacaaaaatttctc--aaaaaaaaaacctgactgatagatgacaagacaatta 362
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 317 caataaagacaaaaatttctcaaaaaaaaaaaacctgactgatagatgacaagacaatta 258

                                                                
Query: 363 tttttgattgccacttaaaatccacagaaacaaataaaacagcaggtgacagt 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tttttgattgccacttaaaatccacagaaacaaataaaacagcaggtgacagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 817
Length adjustment: 9
Effective length of query: 406
Effective length of database: 808
Effective search space:   328048
Effective search space used:   328048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)