BAC Information

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BAC

Clone NameMSMg01-358G10
Chromosome9 (Build37)
Map Location 24,635,068 - 24,635,587
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4, Tbx20, LOC666251
Downstream geneLOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358G10.T7 (MSMg01no358_g10.b1)MSMg01-358G10.TJ (MSMg01no358_g10.g1)
ACCAG468065AG468066
length733680
length of high quality
(start - end)		521 (35 - 555)107 (92 - 198)
definitionCHROMAT_FILE: MSMg01no358_g10.b1 PHD_FILE: MSMg01no358_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:39 2005CHROMAT_FILE: MSMg01no358_g10.g1 PHD_FILE: MSMg01no358_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCTTG
GGATTTCATTGATTCTGTGGGACAGTTGGGTGAAGAACTTGCACCTTAGT
TTTATTTCAATGTGAAATCCATGAGCATAGTATGTTTCTCCTATGTGGGT
CCAGAAGTTCTGCCATGACATGACAGCTTTACGGGTGAGGACACTGACCT
GGATATAATTCTGGTAGTTCTGTGTTATTTCATTCTTTTGCTGAATAACA
TTTTTTTTTCATTTTGTAAGTTTCTATCCTGCTGGTTTTATAGTATGGAC
CTTATACTTGGCTCCATATTAGACTGTTTCTTTAAAATAGTATATATAGT
CTACTGTGCTTCCTCCTGAGAAGACAGAACAAGTAAGCAGCAGCCATCTA
AAGCACTTAGCTTCTCATTTTTCATTGCTCTAGAAAAACAGTTAAAATAG
GTGAGAATAGTAGTATTTGTGTCCACTTTCCAATCCCAAAGGGGAAATAT
CAATTCCCAGCCACCATTAGATGTAATTTTCTAATTTTATCTATGCTAAT
CATTAGATTAGGGGAGTTTTCTTCTGTTTTCAGAATTAGAAAAGACTCTC
CTAAGGCTATTGTTGTTATTGATCGTGAAACTACAGTGAACTTATAAATG
TTTCTTCTATACTAAAGGAAACAGGATCCCCTCCCTTTGTTTTTAACCGG
GTAAAAGGTTAAATTAAAAAGAATTCCTTTTTG

TTTTTTTATTCCAACCCTCGATCTATGGTTAXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGAGAA
TTTCGAAGAAAAGCTAACACCAATATTCCTCAATTTATTCCACTCTGCAG
AAATAGAAGGAGCATTGGCTAATTCATTTTATGAGGCCATAGCCATCTTG
ATAACAATACACACAGACATCCCACAAAGAAGGGGCTTTAACAGAACAGT
TTCCTCTCCCAAAACATTTGATTTCAAAAAAACCCCAATTAAAAAATATT
CCATAAAAATTGAATTCTAAAAAAAAAAAACTTTTTTTTTAAAAAAAGTA
AGGGCGCTTTCCCCTCCCCCCCAAAAAATTTGTGTTTAAGTTAATATGGG
TTTTTTTCTTTTCAACATTATTGGGGGTGGTATATCAAATTTTCTTATGT
GTTTCTTCACTAAATAAAAAAAATTTTGCTTTCCATCATAACCTCGCGTC
TTCTTTATCCTATCCTTTAATTCCTCTCCCCTTTTATATCACCTACATAA
TACAAATGTTAGCAGTATAATAACCACTTCCTCTTTTATTTTTTTATTTA
CCTCTTTTCGTCCTCGGGACAAATATAACGTCATCCCCTCCCTTCTTTTC
GTGGTAAACTCTATTAACTAATTTTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_g10.b1 MSMg01no358_g10.b1 CHROMAT_FILE:
MSMg01no358_g10.b1 PHD_FILE: MSMg01no358_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:39 2005
         (521 letters)



>mm_chr9_24634749_24635671
          Length = 923

 Score =  924 bits (478), Expect = 0.0
 Identities = 509/522 (97%), Gaps = 6/522 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgcttgggatttcattgattctgtgggacagttgggtgaagaacttgcacctt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ggaattctgcttgggatttcattgattctgtgggacagttgggtgaagaacttgcacctt 780

                                                                       
Query: 64  agttttatttcaatgtgaaatccatgagcatagtatgtttctcctatgtgggtccagaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 779 agttttatttcaatgtgaaatccatgagcatagtatgtttctcctatgtgggtcctgaag 720

                                                                       
Query: 124 ttctgccatgacatgacagctttacgggtgaggacactgacctggatataattctggtag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ttctgccatgacatgacagctttacgggtgaggacactgacctggatataattctggtag 660

                                                                       
Query: 184 ttctgtgttatttcattcttttgctgaataacatttttttttcattttgtaagtttctat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ttctgtgttatttcattcttttgctgaataacatttttttttcattttgtaagtttctat 600

                                                                       
Query: 244 cctgctggttttatagtatggaccttatacttggctccatattagactgtttctttaaaa 303
           ||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||
Sbjct: 599 cctgctggttttatagtatggacattatacttggctccatattagact--ttctttaaaa 542

                                                                       
Query: 304 tagtatatat----agtctactgtgcttcctcctgagaagacagaacaagtaagcagcag 359
           |||| |||||    |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tagtttatatgcagagtctattgtgcttcctcctgagaagacagaacaagtaagcagcag 482

                                                                       
Query: 360 ccatctaaagcacttagcttctcatttttcattgctctagaaaaacagttaaaataggtg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccatctaaagcacttagcttctcatttttcattgctctagaaaaacagttaaaataggtg 422

                                                                       
Query: 420 agaatagtagtatttgtgtccactttccaatcccaaaggggaaatatcaattcccagcca 479
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 421 agaatagtagtatttgtgtccactgtccaatcccaaaggggaaatatcaattcccggtca 362

                                                     
Query: 480 ccattagatgtaattttctaattttatctatgctaatcatta 521
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccattagatgtaattttctaattttatctatgctaatcatta 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 923
Length adjustment: 10
Effective length of query: 511
Effective length of database: 913
Effective search space:   466543
Effective search space used:   466543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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