BAC Information

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BAC

Clone NameMSMg01-358I18
Chromosome9 (Build37)
Map Location 111,720,405 - 111,720,862
singlet/doubletsinglet
Overlap genenone
Upstream gene1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
Downstream gene4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358I18.T7 (MSMg01no358_i18.b1)MSMg01-358I18.TJ (MSMg01no358_i18.g1)
ACCAG468177AG468178
length712709
length of high quality
(start - end)
500 (42 - 541)458 (69 - 526)
definitionCHROMAT_FILE: MSMg01no358_i18.b1 PHD_FILE: MSMg01no358_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:50 2005CHROMAT_FILE: MSMg01no358_i18.g1 PHD_FILE: MSMg01no358_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTATAAGATCATCATTAAGAATTAAGAAGTCATCTATTTGTCTATATAG
AATCACTACAAGATAGTACTTCTTCATTGTTCTGCAGAGATCTGCTCAAA
AGGGTGGGCTAAGACCAAGTGATTGTCATATATGTTTAATAATAACAGGA
AAAACACATTGGACAGCAGGAATCATTCCTAAAATGATTTTCTCATGGGC
CTTGCCTATGGGAGGTTCATCATAGATTTCTAATCTAAGGTGGAGTCATC
TCAGGAAGATCACCTGCTAGTTAGTAGCTTGTCCTATGATGGCTCCTGAT
AGGGGATGACTACAGGCTCGGTGGCACTGGTGCTGGGGAACAGACCCAGG
GCTTTCTTCATGCTCAATGAGCACTTTGCCATCTGAGCCACAAGCCAGGT
CCTGAGAAGTGTCTCCTTTTTGCCTTTAATAAGCACGTACTGATGGTTCA
TTCACTGTTCCTCTACAAAGGGCAACTCTTCCTCTATAGAACTCAGAGTG
CAGGAAGGAAAGAACTTACCACCACCTCCCTCATTTCCTTCCTTTGAAAG
CATCTCTGGAGTCAGGGATATGCCATTGAAACATCAGGAAACCCAAACAT
CAGTCCCTTGGTTACCAACCCCCCCCTGGCGGGCCTTTAAAGTTTACTTG
AATGAACCCAGG
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCTGTGATGCTGAGTTGGCTACTGGGTACCC
AAGGGCATCCTCCTGTGTACGACCTTCTGCTCAAAGATCCTTTTTGGAAT
GTGTGGATGGAGCTTGAACATTCTTTGAGGTGTCTACACTCATGTGTCCT
AGAGGGCACGGGAGCCATTTGCATCACGGCTGTGTGTCTTTAGTGTGGAG
CCATTGTAGAGGTTTAATGAGTTAAATTGAAAAGACTAAGCCATTGCTCA
CTGTCTGTATTGCCTGTGATGTGAATTTGATTGTTGGAAGAGACTGGATC
AAGAAAGACTCTTGAGTTTTTAATCATCAGAGGACTGTTGTAATCAATAG
GACTCTTAGAAGACAATAAATTCAAGGACACTGTATGAGAAAACTCAGGG
TGGAATGTGCTTGCTCCACGCTGATGAAAATTCCCCATTTATCTTTTGAA
TTTAATTGAAATAACATTTTAAATAATTGTCAGGCAAGCTTTGTTCTGTT
CCTGTAACCCACAGCCATGGCTATTAATCCACTTCAGGATGAATTATTCC
CAGCTTTCCCTTTGCCAGTGGGGGGAAATACCCCTAAACAACCCAATAAT
TTTTTTTTGGGAACCCTGTGGCCCAATATACTCCTTTTTATTACCGGCCA
ATATAGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_i18.g1 MSMg01no358_i18.g1 CHROMAT_FILE:
MSMg01no358_i18.g1 PHD_FILE: MSMg01no358_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:50 2005
         (458 letters)



>mm_chr9_111720205_111721062
          Length = 858

 Score =  878 bits (454), Expect = 0.0
 Identities = 457/458 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgtgatgctgagttggctactgggtacccaagggcatcctcctgtgtacgaccttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgtgatgctgagttggctactgggtacccaagggcatcctcctgtgtacgaccttct 260

                                                                       
Query: 61  gctcaaagatcctttttggaatgtgtggatggagcttgaacattctttgaggtgtctaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcaaagatcctttttggaatgtgtggatggagcttgaacattctttgaggtgtctaca 320

                                                                       
Query: 121 ctcatgtgtcctagagggcacgggagccatttgcatcacggctgtgtgtctttagtgtgg 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ctcatgtgtcctagagggcacgggagccatttgcatcatggctgtgtgtctttagtgtgg 380

                                                                       
Query: 181 agccattgtagaggtttaatgagttaaattgaaaagactaagccattgctcactgtctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccattgtagaggtttaatgagttaaattgaaaagactaagccattgctcactgtctgt 440

                                                                       
Query: 241 attgcctgtgatgtgaatttgattgttggaagagactggatcaagaaagactcttgagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgcctgtgatgtgaatttgattgttggaagagactggatcaagaaagactcttgagtt 500

                                                                       
Query: 301 tttaatcatcagaggactgttgtaatcaataggactcttagaagacaataaattcaagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaatcatcagaggactgttgtaatcaataggactcttagaagacaataaattcaagga 560

                                                                       
Query: 361 cactgtatgagaaaactcagggtggaatgtgcttgctccacgctgatgaaaattccccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cactgtatgagaaaactcagggtggaatgtgcttgctccacgctgatgaaaattccccat 620

                                                 
Query: 421 ttatcttttgaatttaattgaaataacattttaaataa 458
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatcttttgaatttaattgaaataacattttaaataa 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)