BAC Information

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BAC

Clone NameMSMg01-359J07
Chromosome9 (Build37)
Map Location 16,244,113 - 16,244,454
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
Downstream geneEG434373, LOC100040074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359J07.T7 (MSMg01no359_j07.b1)MSMg01-359J07.TJ (MSMg01no359_j07.g1)
ACCAG468962AG468963
length751741
length of high quality
(start - end)
400 (30 - 429)342 (59 - 400)
definitionCHROMAT_FILE: MSMg01no359_j07.b1 PHD_FILE: MSMg01no359_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:06 2005CHROMAT_FILE: MSMg01no359_j07.g1 PHD_FILE: MSMg01no359_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTTAGCT
CACAGCCCCATTTTTTTTCTTTTTTTTTATTACCTATTTTCTTCAATTAC
ATTTAAAATGCTATCCCAAAAGCCCCCCCCCCACTCCCCTACCCCCCCCA
TTCCCATTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAATGTTT
GCCTAACCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGTCATCTTT
TGATACATATGCCGCTAGAGTCAAGAGCTATGGGGTACTGGTTAGTTCAT
AATGTTGTTCCTCCGATAGGGTTGCAGATACCTTTAGCTCCTTGGGTACT
TTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGTTGACTG
TGAGCATCCACTTCTGTGTTTGCTAAGCCCCGGNCTAGTCTCACAAGGGA
CAGCTATAGCACCGTCGTTGCACAAAAGGTTGCTAGTGTATGCAATGGTG
TCATCCTTTGGAGGTTAATTTTGGGAGGAATCCCCGCAAAGGCAGCCCCT
CATGGAACATTCTTTCGGCTCAACCCCAAATTTTGGCCTGGTATTCTTTT
TCGGGGGAAGTTTTCCATTCTTTAATAGAAAAACAGTCCTACCCTCGCCT
TTGTTCTTTTCCCCTCTTTTAGGGTATTATTTTTCTCCACCCTCTTTTTT
TCTCCTTTTCCGTCTCCTTCCTCATTCCCGATTTTTCCCCCCCCCTTTCT
T
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXACCAGCTCCTAGGACTAAGGCCTTCATTTGTTTCTTAATGAA
GAAAGCTTTGATCTTCAATTCTCCAAGGCTATGATTGTTTTTTATTCTTC
AGTTCTCCTCATTAAATATAAATACCTCCATTCTCCAAGATACACCTGCA
AAGCACTTAAAACACTCATTTGAACAATAGGAAACCTATTTTTGTCTCCT
TGCTAAGAGCCCACTGTTTAAAGTTCTGCTGTACAAGGGAAGGCATTTTT
CTCTGGCACCCAGGCACTGATATGGGTGATAGAATACTGAAATTGAAGGT
TTGCAGCTAATCACTATTTACAGAATAGGCTCAAAGGGCAACTTCTCCGA
GTGTAAGATCTGAGCTGCAATAAGAATTCTTCACATGTTGTCATTAGCTG
AAGGAGGAGGGACCATCCAAGCAGGTGCCACAGCTTGATTTATTGAATAT
TTCAGGCTACATTCCTGGGAATAACATCCAGCGTCAGGAGTGACTCTCTC
TGGGACCTGCTCCAGCCTCTATATAAAAGGCAAAGGACTTCTTTTGGTCC
CTGAGAAAAGCCGGGGCCAGGTACAAATTCCCCTTCCGCCCTTACAAGAA
GGGCTCTATAACTTTTTCCCGTGCCTTTTTTTTTAATACGGGTCGGTGCG
GGGTTTTTTTATACCATCCAAAACCCTTCCGTTTTCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_j07.g1 MSMg01no359_j07.g1 CHROMAT_FILE:
MSMg01no359_j07.g1 PHD_FILE: MSMg01no359_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:06 2005
         (342 letters)



>mm_chr9_16243913_16244654
          Length = 742

 Score =  646 bits (334), Expect = 0.0
 Identities = 340/342 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accagctcctaggactaaggccttcatttgtttcttaatgaagaaagctttgatcttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accagctcctaggactaaggccttcatttgtttcttaatgaagaaagctttgatcttcaa 260

                                                                       
Query: 61  ttctccaaggctatgattgttttttattcttcagttctcctcattaaatataaatacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctccaaggctatgattgttttttattcttcagttctcctcattaaatataaatacctc 320

                                                                       
Query: 121 cattctccaagatacacctgcaaagcacttaaaacactcatttgaacaataggaaaccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattctccaagatacacctgcaaagcacttaaaacactcatttgaacaataggaaaccta 380

                                                                       
Query: 181 tttttgtctccttgctaagagcccactgtttaaagttctgctgtacaagggaaggcattt 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 tttttgtctccttgctaagagcccactgtttaaagttctgctatacaagggaaggcattt 440

                                                                       
Query: 241 ttctctggcacccaggcactgatatgggtgatagaatactgaaattgaaggtttgcagct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 ttctctggcacccaggcactgatatgggtgatagaatactgaaattgaaggtttgcagtt 500

                                                     
Query: 301 aatcactatttacagaataggctcaaagggcaacttctccga 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatcactatttacagaataggctcaaagggcaacttctccga 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)