BAC Information

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BAC

Clone NameMSMg01-359L04
Chromosome9 (Build37)
Map Location 73,171,106 - 73,171,571
singlet/doubletsinglet
Overlap genenone
Upstream geneSuhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
Downstream geneUnc13c, Wdr72
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359L04.T7 (MSMg01no359_l04.b1)MSMg01-359L04.TJ (MSMg01no359_l04.g1)
ACCAG469051AG469052
length770749
length of high quality
(start - end)		53 (52 - 104)466 (59 - 524)
definitionCHROMAT_FILE: MSMg01no359_l04.b1 PHD_FILE: MSMg01no359_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:14 2005CHROMAT_FILE: MSMg01no359_l04.g1 PHD_FILE: MSMg01no359_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTAAACGACTCCTATACGGAGAGGATCCGCGGAATTCTGGGGACTTTTC
AGAGGATATGTAAATGCTATGGCTCTGAGAGGAGGGGTTGTTGTTGATGT
TGGTGCCTTCTTCCCCCCTTCCTTCTCCTCCCCTTCTTCCCCCCCCCCTT
CTTCCCTTTCCTCTCTTTTCCCCCTTTTCCCTCCCTGTCTTATCTCCCCC
ACCTTTCCTCTTTTTTCTCTTCCAACCCTCTCTTTCCCTCCACCCCCTTT
CTTCTTTTTATCTCCACCCACTTCTCCCATTCCACTCCTCCCCCCTCTCC
CTTCTTTTCCCTCCTTCCCCCCTCTTTTTCCCTTCTTTCCCCCCTTTTTC
CCTTTTTTCCCCCCTCCCCCCTTCTTTTTCCCCTTTTCTTTTTCCCCTCC
TTTTTTATTTCTCTTTTTCCCCTCCCCTTATCTCCCTTTCCCCTCTCCCC
CCCTTCTTCCCTTTTTCTCTCCCCACCTTTTCCCTTCTTCATTTCCCCCC
CCCTTCCACTATTTCTTCCTTTTCCTATCTTTCTCGTTACCCTCTCCACC
CCGCCTTTTCTCCCTCCCCTTCCCCTACTTTCCCTTTTTCTACTCCTTAC
CTCTTTTCCGTTCTTTTCCCTCTTACCTATTCTCCCTACCCCCCCTCCCT
TTTCCTTTATTCTTTCCCACCCCCCTATATCCTCTCTTGCCTTCTCTTCT
CCCACCTCTCTTATCTTTATATCACCCCCATTTAGTTACCCCTCCCCTCT
TCTCTCATAATTTCCCCCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCAGGAAACACGAACTTTTATTAATGAACATCTAGGTGATC
ATCATGTCACTGATATGTTAACCACATTATCTCTTCAAAAATTTCGTTAA
CAGTCAATTGGTTATGTAAAGCAAAAAATTACTATAGAGCAGAGTCTGTA
AGAGATTTAAATTTTTGAATTTTAAAAAAGGAGGGAGAAATGAGATTTGT
AGTCCCACAAGATACTTATACATAAAATGATAGAATATTATTTTAATTTT
TCCTCAGGCAGAGTGTGAAAACTGTGAACATTCTAAACCCATGGTAAGAA
CTAAAAGATGTCAAAGAGGTATAATTAATAACTCAGTAGGAGATAAAGCA
GAAAAAGCTCAGTTAGGCACATCTTAAATAATGCTCATTGATTTAAAAAT
AACTCGAGAAGAAATTAGAAGTAATTCTAAATAAATTCAAATGAAAAACT
AGCAAAATTCATGATATGCGGGTAAATTAGTGTTTAAAGCAAAATCAGTG
CCTTCTGGTACAATTTTTTTAAAATGAGATATAAGCTAATGATACAGAAG
ACAACTTGAACAAGAGAAGAACGAACTTTGACTCAATAGGGGAAAATAGA
AATAAATCTACACGACAAGGTTTCTTTTTGGAAAGAACGGTCTAAATAGC
AATCTTTTAACTTTATTCTACAAAGAAAGGGAAATTTATTTCGCTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_l04.g1 MSMg01no359_l04.g1 CHROMAT_FILE:
MSMg01no359_l04.g1 PHD_FILE: MSMg01no359_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:14 2005
         (466 letters)



>mm_chr9_73170906_73171771
          Length = 866

 Score =  878 bits (454), Expect = 0.0
 Identities = 463/466 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccaggaaacacgaacttttattaatgaacatctaggtgatcatcatgtcactgatatgt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 666 tccaggaaacacgaacttttattaatgaacatctaagtgatcatcatgtcactgatatgt 607

                                                                       
Query: 61  taaccacattatctcttcaaaaatttcgttaacagtcaattggttatgtaaagcaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 taaccacattatctcttcaaaaatttcgttaacagtcaattggttatgtaaagcaaaaaa 547

                                                                       
Query: 121 ttactatagagcagagtctgtaagagatttaaatttttgaattttaaaaaaggagggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttactatagagcagagtctgtaagagatttaaatttttgaattttaaaaaaggagggaga 487

                                                                       
Query: 181 aatgagatttgtagtcccacaagatacttatacataaaatgatagaatattattttaatt 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 486 aatgagatttgtagtcccacaagatacttatacatgaaatgatagaatattattttaatt 427

                                                                       
Query: 241 tttcctcaggcagagtgtgaaaactgtgaacattctaaacccatggtaagaactaaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tttcctcaggcagagtgtgaaaactgtgaacattctaaacccatggtaagaactaaaaga 367

                                                                       
Query: 301 tgtcaaagaggtataattaataactcagtaggagataaagcagaaaaagctcagttaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgtcaaagaggtataattaataactcagtaggagataaagcagaaaaagctcagttaggc 307

                                                                       
Query: 361 acatcttaaataatgctcattgatttaaaaataactcgagaagaaattagaagtaattct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 acatcttaaataatgctcattgatttaaaaataactcgagaagaaattagaagtaattct 247

                                                         
Query: 421 aaataaattcaaatgaaaaactagcaaaattcatgatatgcgggta 466
           |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 246 aaataaattcaaatgaaaaaatagcaaaattcatgatatgcgggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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