BAC Information

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BAC

Clone NameMSMg01-360D17
Chromosome9 (Build37)
Map Location 74,878,966 - 75,050,904
singlet/doubletdoublet
Overlap geneBC031353, Arpp19, LOC100040812, Myo5a, LOC677501
Upstream geneWdr72, Nr1h2-ps, LOC100040764, Onecut1
Downstream geneMyo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360D17.T7 (MSMg01no360_d17.b1)MSMg01-360D17.TJ (MSMg01no360_d17.g1)
ACCAG469457AG469458
length742756
length of high quality
(start - end)		527 (49 - 575)478 (77 - 554)
definitionCHROMAT_FILE: MSMg01no360_d17.b1 PHD_FILE: MSMg01no360_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:55 2005CHROMAT_FILE: MSMg01no360_d17.g1 PHD_FILE: MSMg01no360_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,050,382 - 75,050,904)(74,878,966 - 74,879,443)
sequence
NTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCAAAGAGCTTCTTCCCCCACTTCTAAGATTCCAAACCTGA
ACTGTGCTCCACACCGTCTAGCCTCTCTTCCTCAGGCTCAGCTCACTGCC
CCAAACAACTCTCCTTGTTGATTGCTTAACATGCCATGGTTCCTGCCCAG
GGCCGGGAGCCCACGGCCTTATCCCTTTTCTGCCTCTGATGTTCTTTCTT
CAGACATAAGCACAGCTTGTTCCTATTCTCTTTGGCCACTGTGAGCAGTA
CATCCCATCAAGGAGTGTTTCCAGACAACTTTATATAAACTCTACACCCA
TCTTTACTCTATCCTTTTTACCTTTAAACCACCAGCCCTAAAACCTTTTG
GCTAAGTGATGATCATGTTAAAACTGAAGCTCTCTGAAGCTATTTATAGT
ACTAAGCTGAATGCCATGAAGCTGAAGAATGGTCAATTAGGTGTAATTAC
CAATCCCATGGTAGCTGGGAGGAGAGAATGGCAAAGGCTGAAGGTTTAGC
TCACTACTACTTAGAGGCTCACAGTCAAGGCCTTGTGCTCCCTGAAATGC
CTCTTCTACCTTTTACATGATCTCATCCTTTCCATACTCTGCTAGATTTT
TTTCCTTGATTTTTTCCCACCATATTGAAGTGTGTTCCTAAAACATTAGN
CTAAAATATTCCCAGGGATGAAAAGAGAAATTAAAAAACCCC

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTATCTGTGTGTCTAGAATATG
CCTGACCTGCAAAGCCAAGGCATAGTCATATAATTAGCTGGTGTCAGTGG
GAATTTGATGCCTTAGATGAGGAAAGCGCGCATGCAGCGGGGCCAGGGAG
GAACAGTGACGTTGAAACTCGGACTCCCAGAAGACACAAGTCTTGGCCCC
GTTACAGAGCAGAGGGTCTAGGGAATGACGAATTAGTTTTTGACAGCTCA
GCCCCAGATACTGTGGGAAAGGGAATTAATCTCATGGCACAGCAAGAGTG
GTTCTACTTGCTCTCATGAGTAGTTTTACTTATTTTAAAGACTCATCCCC
TAACATCATTGTCTTTTTTTGTATTTATTTAGGTTCCAGAGTTCTAAATC
TGGAAAGATCTACCTCCATAGAGATGTCCGGCTCCTGTTCTCTAGAAAGT
CCATGGAGGTCGATAGCGGTGCTGCGTATGAACTCAAATCCTACACTGAG
TCGCCAACAAACCCTCAGTTTTCACCAAGATGTTGATGAGGGGGACAACT
TAAAAGTATTTGCTCAGTACCCAAGCCTGAACATGGAGATCTCCGAATGG
AATACATCTAACGAAAGCCCCCCGAACACAGTGCCCCTCCTCTGGTGTTC
CGGGCCAAATTTTTTAAGGGCCCCCGGAGTGGGACCCCCGGTCTCCCAAA
TGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_d17.b1 MSMg01no360_d17.b1 CHROMAT_FILE:
MSMg01no360_d17.b1 PHD_FILE: MSMg01no360_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:55 2005
         (527 letters)



>mm_chr9_75050178_75051104
          Length = 927

 Score =  973 bits (503), Expect = 0.0
 Identities = 518/523 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcaaagagcttcttcccccacttctaagattccaaacctgaactgtgctccac 64
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 727 gaattcttcaaagagcttcttcccccacttataagattccaaacctgaactgtgctccac 668

                                                                       
Query: 65  accgtctagcctctcttcctcaggctcagctcactgccccaaacaactctccttgttgat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 accgtctagcctctcttcctcaggctcagctcactgccccaaacaactctccttgttgat 608

                                                                       
Query: 125 tgcttaacatgccatggttcctgcccagggccgggagcccacggccttatcccttttctg 184
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 607 tgcttaacatgccatggttcctgcccagggccgggagcccacagccttatcctttttctg 548

                                                                       
Query: 185 cctctgatgttctttcttcagacataagcacagcttgttcctattctctttggccactgt 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 547 cctctgatgttctttcttcagacataagaacagcttgttcctattctctttggccactgt 488

                                                                       
Query: 245 gagcagtacatcccatcaaggagtgtttccagacaactttatataaactctacacccatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gagcagtacatcccatcaaggagtgtttccagacaactttatataaactctacacccatc 428

                                                                       
Query: 305 tttactctatcctttttacctttaaaccaccagccctaaaaccttttggctaagtgatga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tttactctatcctttttacctttaaaccaccagccctaaaaccttttggctaagtgatga 368

                                                                       
Query: 365 tcatgttaaaactgaagctctctgaagctatttatagtactaagctgaatgccatgaagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcatgttaaaactgaagctctctgaagctatttatagtactaagctgaatgccatgaagc 308

                                                                       
Query: 425 tgaagaatggtcaattaggtgtaattaccaatcccatggtagctgggaggagagaatggc 484
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgaggaatggtcaattaggtgtaattaccaatcccatggtagctgggaggagagaatggc 248

                                                      
Query: 485 aaaggctgaaggtttagctcactactacttagaggctcacagt 527
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaaggctgaaggtttagctcactactacttagaggctcacagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no360_d17.g1 MSMg01no360_d17.g1 CHROMAT_FILE:
MSMg01no360_d17.g1 PHD_FILE: MSMg01no360_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:56 2005
         (478 letters)



>mm_chr9_74878766_74879643
          Length = 878

 Score =  893 bits (462), Expect = 0.0
 Identities = 474/478 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttatctgtgtgtctagaatatgcctgacctgcaaagccaaggcatagtcatataatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttatctgtgtgtctagaatatgcctgacctgcaaagccaaggcatagtcatataatta 260

                                                                       
Query: 61  gctggtgtcagtgggaatttgatgccttagatgaggaaagcgcgcatgcagcggggccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctggtgtcagtgggaatttgatgccttagatgaggaaagcgcgcatgcagcggggccag 320

                                                                       
Query: 121 ggaggaacagtgacgttgaaactcggactcccagaagacacaagtcttggccccgttaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaggaacagtgacgttgaaactcggactcccagaagacacaagtcttggccccgttaca 380

                                                                       
Query: 181 gagcagagggtctagggaatgacgaattagtttttgacagctcagccccagatactgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcagagggtctagggaatgacgaattagtttttgacagctcagccccagatactgtgg 440

                                                                       
Query: 241 gaaagggaattaatctcatggcacagcaagagtggttctacttgctctcatgagtagttt 300
           |||||||||||||||||| |||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 441 gaaagggaattaatctcacggcacagcaagagtagttcttcctgctctcatgagtagttt 500

                                                                       
Query: 301 tacttattttaaagactcatcccctaacatcattgtctttttttgtatttatttaggttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacttattttaaagactcatcccctaacatcattgtctttttttgtatttatttaggttc 560

                                                                       
Query: 361 cagagttctaaatctggaaagatctacctccatagagatgtccggctcctgttctctaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagagttctaaatctggaaagatctacctccatagagatgtccggctcctgttctctaga 620

                                                                     
Query: 421 aagtccatggaggtcgatagcggtgctgcgtatgaactcaaatcctacactgagtcgc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtccatggaggtcgatagcggtgctgcgtatgaactcaaatcctacactgagtcgc 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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