BAC Information

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BAC

Clone NameMSMg01-361H15
Chromosome9 (Build37)
Map Location 7,280,957 - 7,281,337
singlet/doubletsinglet
Overlap geneMmp13
Upstream genePdgfd, EG664919, LOC100039400, LOC100039418, EG547034, Dync2h1, LOC100039658, Dcun1d5
Downstream geneMmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361H15.T7 (MSMg01no361_h15.b1)MSMg01-361H15.TJ (MSMg01no361_h15.g1)
ACCAG470395AG470396
length753749
length of high quality
(start - end)
415 (44 - 458)381 (142 - 522)
definitionCHROMAT_FILE: MSMg01no361_h15.b1 PHD_FILE: MSMg01no361_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:32 2005CHROMAT_FILE: MSMg01no361_h15.g1 PHD_FILE: MSMg01no361_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:32 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NACTTTTTCCTCNTGTCAGCTAACCGACTCACTTTCGGGAGAGGATCCGC
GGAATTCTCAATTTACCAAAAGAGATGACTAGGAAATGTATCAAAAACAG
TCTATTCTTTCTAGCAATTAGGCAAATTCAAGTCAAAATACCTTTGAGAG
TTTATCTTAACCCAGTCAGAATGGAAATGACCAAGCAAACAAAGAACAAT
GAATGCTGCATGGGGGCTGGGAAAGAACAAAAAGGGTCTCCTTCACTGTT
GTTAGGAGCTGCAAACCAGAGCAGTCACTGTGGAAATCAGTGTGGACCCA
CCCCTTGGCATATGCGCATAGGTATTTGCTCATCCATGTTCATTGCTGCT
CTATTCACAATAGCTAGAGAATGAAAGTAACCTAAATGTCCTTCAATTGA
TGAATGGATAATGAAAATGTGGTTCACATACACCATGAACTATTATTCAG
CTGCAAAGAGAAAAAGGAAATTATGAACATTGCAGAGAAATGGATGGAAC
TAGAAAAGATCATATTGAATGATGTAACCCAAAAAGACAAAGAGCACCTG
TTCTAAGTTGTTGGAGGCTCCTACCTCTAAATCGTCCGATGTGAGTACAT
AACCCGCAGTAACCACCGTAATCAAGACAGTAAAATAGGGGCCATTACCA
CGATATGAAGGTGGGTACCACACCACACGGATAATGATACGACCCCAGTT
GACTTGACCTCAAAACCCGCGAAAATGGTATCTTCTACTTATTTAGCGCG
TAN
NCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGAATTGGCAACAAAGTAG
ATGCTGTCTATGAGAAAAATGGTAAGTAGTTACATTGCACTGATTTTATA
AAAGGGCTTCTGGGCCCTCAGACGTTTTTCATATACAAAGAATTTTAATA
AAGAATTCAAATGGCTTATATATGCATGCTCACTAAGGTATTGTTTCTGT
GTGATTACTTAGATAGCAAAAAAATAACCTGATTAGAATCAATGAGAATT
TTACTTAATTACTACCAAGTGTGTGAACAACAGATCTTGAACCTCAGGAT
GACCTTAAATTACATGTAAAAGTGTCAAGAGGCAGAGGGTTATGTCAAAA
TTCAAATTAGGGCTGGAGTGGAGAGTAATTTATAAAGATTCATAATTATC
ATAACTATACAGTTATTTTTGCTTTAATTACAATGGGAATTATCTCTGAA
TATGAACGTTCAAAACTAGAACTTGTAACAAGACAGTTAATTCTAGTGCA
TAATTTATGTAATCTATGAATATTTATATATATTTTTAAAATACCTCCAA
TAGAGTATATTTTAATAATCTCCCCTGCTCCTCTATTTTCCCTTAAACTC
CCTTATGTGCCTTCCTCACATAGCTGTCTTTCCTTGATTTTAAACTCTTA
TATCCCTTATATTAACACCTACGCCCCCAAAACTCTGTTATACTTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_h15.g1 MSMg01no361_h15.g1 CHROMAT_FILE:
MSMg01no361_h15.g1 PHD_FILE: MSMg01no361_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:32 2005
         (381 letters)



>mm_chr9_7280757_7281537
          Length = 781

 Score =  729 bits (377), Expect = 0.0
 Identities = 380/381 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattttataaaagggcttctgggccctcagacgtttttcatatacaaagaattttaataa 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 gattttataaaagggcttctgggccctcagacgttttttatatacaaagaattttaataa 260

                                                                       
Query: 61  agaattcaaatggcttatatatgcatgctcactaaggtattgtttctgtgtgattactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaattcaaatggcttatatatgcatgctcactaaggtattgtttctgtgtgattactta 320

                                                                       
Query: 121 gatagcaaaaaaataacctgattagaatcaatgagaattttacttaattactaccaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatagcaaaaaaataacctgattagaatcaatgagaattttacttaattactaccaagtg 380

                                                                       
Query: 181 tgtgaacaacagatcttgaacctcaggatgaccttaaattacatgtaaaagtgtcaagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgaacaacagatcttgaacctcaggatgaccttaaattacatgtaaaagtgtcaagag 440

                                                                       
Query: 241 gcagagggttatgtcaaaattcaaattagggctggagtggagagtaatttataaagattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagagggttatgtcaaaattcaaattagggctggagtggagagtaatttataaagattc 500

                                                                       
Query: 301 ataattatcataactatacagttatttttgctttaattacaatgggaattatctctgaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataattatcataactatacagttatttttgctttaattacaatgggaattatctctgaat 560

                                
Query: 361 atgaacgttcaaaactagaac 381
           |||||||||||||||||||||
Sbjct: 561 atgaacgttcaaaactagaac 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)