BAC Information

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BAC

Clone NameMSMg01-361L06
Chromosome9 (Build37)
Map Location 25,294,187 - 25,294,508
singlet/doubletsinglet
Overlap gene2310005P05Rik
Upstream geneCypt4, Tbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361L06.T7 (MSMg01no361_l06.b1)MSMg01-361L06.TJ (MSMg01no361_l06.g1)
ACCAG470565AG470566
length730749
length of high quality
(start - end)		328 (56 - 383)560 (85 - 644)
definitionCHROMAT_FILE: MSMg01no361_l06.b1 PHD_FILE: MSMg01no361_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:49 2005CHROMAT_FILE: MSMg01no361_l06.g1 PHD_FILE: MSMg01no361_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTCCTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTATCTATGTTGATCCCACTAATCAAGTCTGACAGA
CTAAACCCTGTTGGGGGTGGGGGAGGGGGTTCAGAACTGTACAAGTTGCC
AGGCATTAATCTACGTATGATTTGCCAATGAAGAATCAGAAAGAAATACG
ATTAAAACCATTAAAAAGCTAACTACTTCGACACTGAAGTTTCCTTCGGC
TATAGAATATGAGGAAGCCAGGCAACTGCGATGGTTGAATCTCCTTATTT
CTTTTGGAGATTCTCTATCAGTTTTCCCTGCGTTTATTGTCAGAAACCAA
AGGGACACTGGAAGATAGAATGCTTACTCAGTAATAAACTAACACCAAAG
GATCACTGCTCACGCTGGCCAGCACTTTGCAAGGAAGAATCATGCTTCTT
TCATTCCTGACCAATGAGGAGTCAGGGAAGGAATGAGGAATAACATTGCC
TACTATCAAGGCTTGGTATGTGAATCTGATGTAATCGTCATTGCATATAC
CTATGCCACAGCATGTTGCCCCCGATAGTTCCTGGTGACTAAAATATTCC
TCTCTCTTAACTTCTTTCTTATCGTTTCCCGTTCCCCTTTTTTCCCTTCC
TCTTTTCCATTTATCTTCCCTCTTAACCTTATCCTTCCCTTTGGGCTCCC
CTCCCCTTTATTTATTACCTTTTTCGTTTT

CCCTCTATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCTATAGCCCAAAC
CTAACCTGGCATTGTGAGTTTTAGAGAACCAGAGCTGAGGGCTAAGCCAC
ACCCCACTGGTCTGGCCAGTGCTAGACAGGGACGCATGAGCAGGGGGGCA
GGGGGTCTATTGGATTGTCCTTGTTGAAAGAATATGGCATAGCTTTGGTT
CTGGCCATCAATGCTGGTGATGCAGGTTAGCCACAAGGTTATATGAAGCC
TATAGTGCTATGTTGTTCCAAAGACTCCATTTGAGGGAAGTAAGGCAGTT
AGAAAATAATCCTAAAATGTATTTTAAAAGTGACAATCCTGTTTTGAAGA
AATCCTCTTAACATGGAAAAGTGTTAGCACTGCCTCATTTATTTAAATAA
CAGGGTGTTGTGTTTTGAACGAGAATGGTCCCCTTAAGCTTGTTTGTTTA
TTTTTTATTTAAGTTTTATTGTATTATGAGAAAAGATACATAATTTCAAT
TTATCTGAATTTGTTAACATTTAAAAACATATTTTGAGTATGTGACTTAC
ATCACATTTTTCTTTCCCTTTTGTACCCCAACTTCTCCCAGAGACCCTCT
TCAATACCTGTCATACCTTCCATTTTTTATCATATTTTTGAAAATTTATA
AATATTATTCCAATAAAATGAGTATTATTAAAGTTGTTTGATATAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_l06.b1 MSMg01no361_l06.b1 CHROMAT_FILE:
MSMg01no361_l06.b1 PHD_FILE: MSMg01no361_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:49 2005
         (328 letters)



>mm_chr9_25293983_25294710
          Length = 728

 Score =  615 bits (318), Expect = e-180
 Identities = 321/322 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatctatgttgatcccactaatcaagtctgacagactaaaccctgttgggggtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattctatctatgttgatcccactaatcaagtctgacagactaaaccctgttgggggtg 467

                                                                       
Query: 65  ggggagggggttcagaactgtacaagttgccaggcattaatctacgtatgatttgccaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 466 ggggagggggttcagaactgtacaagttgccaggcattaatctacgtatgatttgccaaa 407

                                                                       
Query: 125 gaagaatcagaaagaaatacgattaaaaccattaaaaagctaactacttcgacactgaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gaagaatcagaaagaaatacgattaaaaccattaaaaagctaactacttcgacactgaag 347

                                                                       
Query: 185 tttccttcggctatagaatatgaggaagccaggcaactgcgatggttgaatctccttatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tttccttcggctatagaatatgaggaagccaggcaactgcgatggttgaatctccttatt 287

                                                                       
Query: 245 tcttttggagattctctatcagttttccctgcgtttattgtcagaaaccaaagggacact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tcttttggagattctctatcagttttccctgcgtttattgtcagaaaccaaagggacact 227

                                 
Query: 305 ggaagatagaatgcttactcag 326
           ||||||||||||||||||||||
Sbjct: 226 ggaagatagaatgcttactcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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