BAC Information

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BAC

Clone NameMSMg01-363F17
Chromosome9 (Build37)
Map Location 36,226,975 - 36,227,186
singlet/doubletsinglet
Overlap genenone
Upstream geneCdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485
Downstream geneEG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363F17.T7 (MSMg01no363_f17.b1)MSMg01-363F17.TJ (MSMg01no363_f17.g1)
ACCAG471816AG471817
length762787
length of high quality
(start - end)
472 (34 - 505)214 (79 - 292)
definitionCHROMAT_FILE: MSMg01no363_f17.b1 PHD_FILE: MSMg01no363_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:02 2005CHROMAT_FILE: MSMg01no363_f17.g1 PHD_FILE: MSMg01no363_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTGTCACTATACGACTCACTATATTCAGAGGATCCGCGGAATTCCTGAT
CTTTCAAGACTTTTATCATGAATGGGTGTTGGATTTTTTCAAATGTTTTC
TCCGCATCTAAGGAGATGGTTATGTGGTTTTTGTCTTTGAGGNTTTTTTT
TTTTTTTTTTTTTTTTTTGAGGAGGAAAAGGTTTATTCAGCTTACACTTC
CATACTGCTGTTCATCACTAAAGGAAGTCAGGACTGGAACTCAGGCAGGT
CAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTACTTACTGGC
TTGCTTCCACTGGCTTGCTCAGCCTGCTCTCTTATAGAACCCAAGACTAC
CAGCCCAGAGATGGTCCCACCCACAATGGGCCCTGCCCTCTTGATCACTA
ATTGAGAAAATGCCTTACAGCTAGATCTCATGGTGGCATTTCCTAACCTG
GAGGTCCTTTCTCTGTGATAACTCCAGATTGTGTCAAGTTGACATAAAAC
CAGCCAGTACACTGTCTCACTTCGTAGCCCTGGCTAGCCTGGAACTCACT
ATGAAAACCACGCTGGTCTTGAACTCACAGAAATCTACCCTCTTCTGTCT
CCCCAGTGTTGGGCTCCAACACCTTCCTTACCCCTTGTGGCCTTTCACCA
ACTCCTTTTTTTTTTCACCTTCTATAAAGAAAACTCCTCCACCCTCTTTT
TCTTGGCGACCCTCCATTGCCCCTTAACCTCACTTTCGCTAATTCCCCTC
CCTTTTCCTTCN
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCCCCCCCGGTGACTTCGAT
GCTTTTTTTTTCCAATTTCTCCTCTATACACTTTAGCTGTATTTTCTACA
ATAACGTGTATTACCATACTATTTTGGATGTTGTGTAGTGCACTGTGTAC
TATATAAAGTTCACTCCACAAGAGCTTGTATAGTAGTTTACAATATTGTC
AAAAAAAATAGGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGNNTTNNNN
NNNNNNNNNNNNNNNNNNTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTTTTTTNNTTTTTTTTTTTTTTTTTTNTTTNNNTNN
NNTTTNNNNNNNTNNNTNNTNTNTTTTTTTTTTTTTTTTTTTTTTTTNTT
TTTTTTTTTTTTTTTTTTNTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTNTTTTT
TTTTTTTTTTTTTNNTTNTTTTTTTTTNTTTTTTTTTTNNTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTNNNNNTTTTTTTTTTNTTTTNTTTTTTTTTTTNT
TTTTNTTTTTTTTTTNTTNTTTTTTTTTTTTTTNTTNTTTTTTTTTTTTT
NTNTNTTTTTTTTTTTTTNNTNNTTTTTTTTTTTTNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_f17.g1 MSMg01no363_f17.g1 CHROMAT_FILE:
MSMg01no363_f17.g1 PHD_FILE: MSMg01no363_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:02 2005
         (214 letters)



>mm_chr9_36226774_36227387
          Length = 614

 Score =  391 bits (202), Expect = e-113
 Identities = 211/214 (98%), Gaps = 2/214 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccccccccggtgacttcgatgctttttttttccaatttctcctctatacactttagct 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cccccccccc-gtgacttcgatgctttttttttccaatttctcctctatacactttagct 260

                                                                       
Query: 61  gtattttctacaataacgtgtattaccatactattttggatgttgtgtagtgcactgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtattttctacaataacgtgtattaccatactattttggatgttgtgtagtgcactgtgt 320

                                                                       
Query: 121 actatataaagttcactccacaagagcttgtatagtagtttacaatattgtcaaaaaaaa 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 actatataaagtttactccacaagagcttgtatagtagtttacaatattgtcaaaaaaa- 379

                                             
Query: 181 tagggtttggtttggtttggtttggtttggtttg 214
           ||||||||||||||||||||||||||||||||||
Sbjct: 380 tagggtttggtttggtttggtttggtttggtttg 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)