BAC Information

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BAC

Clone NameMSMg01-364G01
Chromosome9 (Build37)
Map Location 23,428,926 - 23,429,288
singlet/doubletsinglet
Overlap genenone
Upstream geneBbs9, Bmper
Downstream geneLOC100040866, LOC100040878, LOC100040893, Npsr1, Dpy19l1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364G01.T7 (MSMg01no364_g01.b1)MSMg01-364G01.TJ (MSMg01no364_g01.g1)
ACCAG472590AG472591
length808807
length of high quality
(start - end)
364 (48 - 411)363 (76 - 438)
definitionCHROMAT_FILE: MSMg01no364_g01.b1 PHD_FILE: MSMg01no364_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:28 2005CHROMAT_FILE: MSMg01no364_g01.g1 PHD_FILE: MSMg01no364_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTGTTTATCTCTATACCCCATTTTAAATAGAATTATTTGGTT
CTCTTCTTAACTTCTTAAGTTCTTCATTTATTTTGGATATTGGCCCTCTA
TCGGATATAGGGTTGGTAAAGATATTTTCCCAATCTGTGGATTGCCATTT
TGTCCTATTGACAGTGTCCTTTGCCTTGCAGAAGCTTTTCTATTTTATGA
GGTCTCATTTGTCAATTGTTGATCTTAGAGCATGAGCCATTGGTGTTCTG
TTTAGGAAATGCCCCCATATGCCAATATGTTTGAAGTTCTTTCCCACTTT
TTCTCCTATTAGAATAAGTGTATCTGCTTTTATATGGAGGTCATTGATCC
ACTTGGACTTGAGCTTTGTACAGGACATAATTATGGATCCATTTGCATTC
TTCTACTTGCCAACTATCAGTTGAACCAGCACCATTTGTTGAAAATGCTG
GCTTTTTTCCTCTGCATGGCTTTGGACTCTTTTTTTATAACCCAGTGACC
TTCTATTTGCGGCCCTCATCTCCCGATGCTCTTTCTCTTATTTATTTGTA
TTTATCTGTCTCTTCTTTCCCTCCTATTCTTTCGGTCTGCTCTTTTTCAT
CTTTTTACTTTTGTCCCCCTCCTTCTCCTATACTTTCTTGTACTTCACCA
CCTTTTCCCCTCGCCCTTTTTTTTTCCCTTGTCGTTTTTCCTTCTTCATG
TACACCCTCTTTTTAGTTTTTAGCTGTGGTAGCTCGTTTCTTTTATTTTT
ATCTCCCC
ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAAACCTAGGTGAATCTGAATAGT
CAGGTGAGAAGCAAATACTTGTATTTCTGAAAAATACTAGGTGCAGAATT
TAAAAGAATTTGGGAAAAGCTCTACCCTGCTTATCACTGACTTATGGCTG
TCTACGCTAATTGCTTGGACAATTCCTGGTAGGTAAACCATAGAGCCCTC
AGACTCAGGTTGTAACGCTGATACTGTAAATGCAAAGATGTAAAAGGAGT
TGTAAATGTGACTATGGTTTCCCTAAGAAAACAGTTAAGCCTATGTTCCT
AAATCAATCAGGAAAAGAGTTTGTCAAACGGGACAAAGTAAATTTTGTAG
AAAATGTGATTCCGAAAGAATGACAGGAACCCAAGAAGTGATTTTTGATA
TGACAAATGCTGTGATAAAATCTTACATCCTGGAGTCACTGCCTCCAAGG
ACTAAGTAGTCAGGCTTACTGGCAGGACCCATGTTCCAGACCAGGATTAC
TTCTGCTGGTAAAATTGAAAATTAACCATCCCATTTCTGTCAAGAGCTTG
GCCCACCCCTTTACCGGACTATGAACTCTTGCCGTGTTCAAACGCACCTA
TTCTTGTTCTCCCTGCCACAGAGATACCTTTACTATTATTCTTCCTTGTA
AATGTGTCCTGTAGTGTCCCCTTGTTCTTCAAAGGTATTGACTTTATACC
CGGCTCTTCCCATTCTCCCCTGGGACTTCATCTCCTCGCCGCCGGTCATT
ATTCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_g01.g1 MSMg01no364_g01.g1 CHROMAT_FILE:
MSMg01no364_g01.g1 PHD_FILE: MSMg01no364_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:28 2005
         (363 letters)



>mm_chr9_23428726_23429488
          Length = 763

 Score =  671 bits (347), Expect = 0.0
 Identities = 359/363 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaacctaggtgaatctgaatagtcaggtgagaagcaaatacttgtatttctgaaaaat 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 taaaacctaggtgaatctgaatagtcaggtgaggagcaaatacttgtatttctgaaaaat 260

                                                                       
Query: 61  actaggtgcagaatttaaaagaatttgggaaaagctctaccctgcttatcactgacttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaggtgcagaatttaaaagaatttgggaaaagctctaccctgcttatcactgacttat 320

                                                                       
Query: 121 ggctgtctacgctaattgcttggacaattcctggtaggtaaaccatagagccctcagact 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctgtctacactaattgcttggacaattcctggtaggtaaaccatagagccctcagact 380

                                                                       
Query: 181 caggttgtaacgctgatactgtaaatgcaaagatgtaaaaggagttgtaaatgtgactat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggttgtaacgctgatactgtaaatgcaaagatgtaaaaggagttgtaaatgtgactat 440

                                                                       
Query: 241 ggtttccctaagaaaacagttaagcctatgttcctaaatcaatcaggaaaagagtttgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtttccctaagaaaacagttaagcctatgttcctaaatcaatcaggaaaagagtttgtc 500

                                                                       
Query: 301 aaacgggacaaagtaaattttgtagaaaatgtgattccgaaagaatgacaggaacccaag 360
           ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 aaacgggacaaagtaaattctgtagaaaatgtgattccaaaagaatgacaggaacccaag 560

              
Query: 361 aag 363
           |||
Sbjct: 561 aag 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)