BAC Information

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BAC

Clone NameMSMg01-364K20
Chromosome9 (Build37)
Map Location 47,467,614 - 47,468,026
singlet/doubletsinglet
Overlap geneCadm1
Upstream geneEG667890, 2900052N01Rik, D930036J05
Downstream geneLOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364K20.T7 (MSMg01no364_k20.b1)MSMg01-364K20.TJ (MSMg01no364_k20.g1)
ACCAG472816AG472817
length775786
length of high quality
(start - end)		450 (53 - 502)413 (82 - 494)
definitionCHROMAT_FILE: MSMg01no364_k20.b1 PHD_FILE: MSMg01no364_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:52 2005CHROMAT_FILE: MSMg01no364_k20.g1 PHD_FILE: MSMg01no364_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCACCTGATGTAAACTGAATGGCTGAGAAGCACCTGAA
AAAATGTTCAGCATCCTTAATCAGCAGAGAAATGCAAATCAAAACAACCC
TGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGT
GACAGCAGAGGTGCTGGAGAGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTACAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCG
GTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTC
TCCTGGGCATATATCCAGATGATGTTCTAACCGGTAAGGAGGATACATGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAGAGGAATGGGTACAAAAAATGTGGGACATTT
ACACAATGGAGTACTACTCAGCTATTAAAAGGAATGAATTTATGAAATTC
CTAGGCAAATGGTTGGACCTGGAGGGCACCATCCTGAGTGAGGGAACCCA
TCCCAAAAAAATCCCAGGGATGGTCCCCCTGGGAAAGGGGTTTTACCCCC
AACTTTAAAAACCCGAAATTAAAAAATAATTTGGTTGAACCGAAAAAAAA
CAAAAACAAAAGGGGGGGCCCTTCCCCCCCCTTTAATTGGAAAAAATCCC
CCGCGGAGGGCTTCGATAAAAATTT

NTTTTGTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGTGCCAAGAAAATGTCTG
TATTCCATGTGAATTCATGTGCTTTCCTTAATCAGATAAGCATTACCCAA
GCCAAAGTTTTCCTTTTATGTCTTGGCTAACCAACAGAAAACTCAAAGCT
AAATTCAGTGCCAAAAATCTAAGAATAAATCCAACCAGGCACTGAGCAGA
ATTCTCATTCTCTTCTTTAATTGGTTTTTGACCTTTTCTAAAATTATTTT
ACTTGTACTGTAATATTGGACGCTATTTTTTCCCCAAAGAGTAGGGCCAT
ATAACAGAAAGAATCAGACATGAGTACTTGCTTCACTGCTTACAAGATGT
GTGACCTACATCACCAAAGTTACATAATTGCTCTCTAGTCCTATTTTACA
CCGTACATTCAAAGTAACAGCGATCACCCAACCCCACTCTCAAGAATGAG
GGCAATCTGTGAGCCACACAGCCAAGCTAAGTAAACGAAGGTAATAATTA
TCAGAAGCAGCGTTACTATATTCTTGAACTAAAACTTGAATGGCTGAAAA
GGTCATCCCCAGCTCCCCTTTTACCCTTGAAGAAAACTAATTTCAAAAAA
GGTGGGGGGGACAAGGAAAAAGGGTAACCTTGTTTGAAGAAAAAACCCTA
AAGGGAAAGGGGGGCCCCAAATTCCACCCCCCCCGGGGCGAAAAAGAAAG
AGCGCCCCCACAAAGTGGGGAAAAAAAAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_k20.g1 MSMg01no364_k20.g1 CHROMAT_FILE:
MSMg01no364_k20.g1 PHD_FILE: MSMg01no364_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:52 2005
         (413 letters)



>mm_chr9_47467414_47468226
          Length = 813

 Score =  799 bits (413), Expect = 0.0
 Identities = 413/413 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgtgccaagaaaatgtctgtattccatgtgaattcatgtgctttccttaatcagataagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cgtgccaagaaaatgtctgtattccatgtgaattcatgtgctttccttaatcagataagc 554

                                                                       
Query: 61  attacccaagccaaagttttccttttatgtcttggctaaccaacagaaaactcaaagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 attacccaagccaaagttttccttttatgtcttggctaaccaacagaaaactcaaagcta 494

                                                                       
Query: 121 aattcagtgccaaaaatctaagaataaatccaaccaggcactgagcagaattctcattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aattcagtgccaaaaatctaagaataaatccaaccaggcactgagcagaattctcattct 434

                                                                       
Query: 181 cttctttaattggtttttgaccttttctaaaattattttacttgtactgtaatattggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cttctttaattggtttttgaccttttctaaaattattttacttgtactgtaatattggac 374

                                                                       
Query: 241 gctattttttccccaaagagtagggccatataacagaaagaatcagacatgagtacttgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gctattttttccccaaagagtagggccatataacagaaagaatcagacatgagtacttgc 314

                                                                       
Query: 301 ttcactgcttacaagatgtgtgacctacatcaccaaagttacataattgctctctagtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttcactgcttacaagatgtgtgacctacatcaccaaagttacataattgctctctagtcc 254

                                                                
Query: 361 tattttacaccgtacattcaaagtaacagcgatcacccaaccccactctcaag 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tattttacaccgtacattcaaagtaacagcgatcacccaaccccactctcaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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