BAC Information

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BAC

Clone NameMSMg01-364P03
Chromosome9 (Build37)
Map Location 90,951,160 - 90,951,703
singlet/doubletsinglet
Overlap genenone
Upstream geneCtsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
Downstream geneEG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364P03.T7 (MSMg01no364_p03.b1)MSMg01-364P03.TJ (MSMg01no364_p03.g1)
ACCAG473020AG473021
length7651,305
length of high quality
(start - end)		548 (49 - 596)---
definitionCHROMAT_FILE: MSMg01no364_p03.b1 PHD_FILE: MSMg01no364_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:16 2005CHROMAT_FILE: MSMg01no364_p03.g1 PHD_FILE: MSMg01no364_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTGTTCTATGATTCCAAATGCACCACCATATCTATCTAAAC
TCCAAGTTACTCTTAATGCAAATAGCATGAACTTTGATTTGAGATTCAGT
TTTGAATAGAGACTCCCTAGTTTTCATTGATATATGAAAACTAAACAAAC
TGGGTATTTAATTCACTGTGTACTTATTAGGTATCCATATTGAATGCACA
TACCTGCCCTGCACTATGGATTTCCATTCCATTATCCCTGTCCATGATTA
CATATAAACTCCTTGAGAATAAAGAACAATATCTTACTTTGCATTGCCGG
CTCTCCATTAGCCACGATTCTTTAGTTAGGGGAAGGTTGAGATTTAACTG
TTCATATAACTAAACAGCCAAAATGACCTTCCTGCTCTTTCTTTCAACTG
GTGATTAAGCTCTGACTAATGGCAGGCAGATGGAAATTATGGCTGAAATG
TGTATTGTGATTTATTCACAAAGATTCATTCCAAGTAATTTAGGTAAAAA
ATTAAAATAAAGCAATCAAACCAATAATAAAACCATTTATAAGTGAGATG
CTCATTGAAGTGGGGCTTTCCCAAAACCAAGAGCTGTGATCATTCCCAAA
GGGAAAAGAAAATCCTTCTGGCGGGGCTCATGAAAAGGCGGATCTCTTGG
GAGACTTAAGCCGTTGCCTAGCAAACTCAAAAAAGGATGCCCCCGCCCAC
TTTTGGAGGGGACCC

AATAAATAAGAATATACGGCAAGTACGACGCGCACGTAATTTACAACATA
TACTACAACAATACATCTACTACTACAACTAATATACATTTCGATTATCG
CTGATTATCGACGCGACAATATCACGTACGTACTAATTATATTTACTAAC
GTCAATACGATCATATATCCGTAACTACAAACGATACGAATATTATACGT
TACGCGATATATTATTTTATCTCTAATTCGTTTTTATATCACGAAATACA
CGTTCCGCTCATCATCCTTATTATTATCAACTCTCTCTCTACATATATTT
CTTCACTCTTAATATCATTCTTTNTCACCTATTATCACCAATATCAATAC
CTAAATCCATATCAACTATACAAATATACTATAAATTAACAATAATATCT
ATATCATCACTAACATAATCTCTACACTACCTTCTCATCATCCTCNTCTA
TCTCAGCATTTCCGCTACACTCCTCTCTCTNCTTAGACTCTATATTCTCA
CTCTTCCTATATTATTTCACTCATTATCTCCCACACCCTTCTACATCTCA
ATCACTTCTCAACACACTAAACCACTCAATCTACACACTACTCTCACTAT
CTATATTAATCACAATCATTCTCTAAACTCATCATAACACTCATTTCAAA
TAATAATAACTATCTACATACTATATTCTTCATATTATCTCACACATAAA
CTTCAATTCATAAATATAATATATAAACATATATATCTCTCTTACATAAT
CTACTACACATATCACAACTCACATTCCATACACTACCCACATACATACC
AATTCATATTAAAAAATTATTACATACACTACACATAATACTANTTATTC
CATCTCTCTATCTAATTTACCTATCTAAATTATAAATCTTATCCAAATCC
TATATACAAACAATTGTACATCACATTCCTATCTTCTCTCACATATTATC
AAATCATATATCACATTAAATTATCTTCTCCAATTATTATTTATACATCT
CTTCCCATTAACACATATTATTATCATTCACATATGTATACTATATCTCT
ATTTATCTATCTTCACTACAATCTCCCTTTCCAATATAACTTCTCCATCT
ATATCTACTCCAATTTTATTCTCCTACAATTATANTCAAAATCTTTAATA
NATTATTCTATATCAACACTAATAATCACTATCACTTTATCATATAGCTC
TCCAATACTATACATATAATTCAATTATCTATACAGAACACCACTCTATT
CCTCTCTATGTATACTATATATNATCATCATAATCTACGCACTAGATATT
CATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_p03.b1 MSMg01no364_p03.b1 CHROMAT_FILE:
MSMg01no364_p03.b1 PHD_FILE: MSMg01no364_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:16 2005
         (548 letters)



>mm_chr9_90950956_90951903
          Length = 948

 Score = 1006 bits (520), Expect = 0.0
 Identities = 538/544 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttgttctatgattccaaatgcaccaccatatctatctaaactccaagttactc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttgttctatgattccaaatgcaccaccatatctatctaaactccaagttactc 264

                                                                       
Query: 65  ttaatgcaaatagcatgaactttgatttgagattcagttttgaatagagactccctagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaatgcaaatagcatgaactttgatttgagattcagttttgaatagagactccctagtt 324

                                                                       
Query: 125 ttcattgatatatgaaaactaaacaaactgggtatttaattcactgtgtacttattaggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcattgatatatgaaaactaaacaaactgggtatttaattcactgtgtacttattaggt 384

                                                                       
Query: 185 atccatattgaatgcacatacctgccctgcactatggatttccattccattatccctgtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atccatattgaatgcacatacctgccctgcactatggatttccattccattatccctgtc 444

                                                                       
Query: 245 catgattacatataaactccttgagaataaagaacaatatcttactttgcattgccggct 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 catgattacatataaactccttgagaataaagaacaatatcttattttgcattgccggct 504

                                                                       
Query: 305 ctccattagccacgattctttagttaggggaaggttgagatttaactgttcatataacta 364
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 505 ctccattagccacgattctttagttaggggaaagttgagatttaactgttcatataacta 564

                                                                       
Query: 365 aacagccaaaatgaccttcctgctctttctttcaactggtgattaagctctgactaatgg 424
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 aacagccaaaatgaccttcctgctctttcttacaactggtgattaagctctgactaatgg 624

                                                                       
Query: 425 caggcagatggaaattatggctgaaatgtgtattgtgatttattcacaaagattcattcc 484
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 625 caggcagatggaaattatggctgaaatgtgtattgtgatttattcacaaatattcattcc 684

                                                                       
Query: 485 aagtaatttaggtaaaaaattaaaataaagcaatcaaaccaataataaaaccatttataa 544
           ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 685 aagtaatttaggtaaaaaattaaaataaagcaatcaaacaaataataaaacaatttataa 744

               
Query: 545 gtga 548
           ||||
Sbjct: 745 gtga 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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