BAC Information

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BAC

Clone NameMSMg01-365M17
Chromosome9 (Build37)
Map Location 83,456,724 - 83,457,149
singlet/doubletsinglet
Overlap geneSh3bgrl2
Upstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200
Downstream geneLOC100039222, Elovl4, Ttk, EG546150, Bckdhb, EG666669
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365M17.T7 (MSMg01no365_m17.b1)MSMg01-365M17.TJ (MSMg01no365_m17.g1)
ACCAG473665AG473666
length786758
length of high quality
(start - end)		425 (63 - 487)430 (58 - 487)
definitionCHROMAT_FILE: MSMg01no365_m17.b1 PHD_FILE: MSMg01no365_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:23 2005CHROMAT_FILE: MSMg01no365_m17.g1 PHD_FILE: MSMg01no365_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGT
TTCTATCCAAAAGAAAAAAAGTCATTCTGTTAATGAGATGAAGTCTCTGT
ATGAGGGTCAGAGGGCCTGGCAGAGTCCCATTGTCCCTCAGTGTTAACAC
CCAAATGTCTGGATGCTTGACCTGGCACCTGGGCAGTCTGACCTGTTTCT
GGTCTGTCTGTGTAGCTTTCTCTCGCCATAAATACACCAGGCTTCTCCTC
CACCCTGGCTGGTCCTGTGGTCCTCTCCACCTTGTCTGAGGACTCCCTAT
GTGACATGCAGTCTTATTCCCTTCGCTCTTCAAAGCATGGGGCAGGGCTG
TTTCCCCACGCTCCCTTTGCCTCTCTCTTCTTGCTGTCCAAAGTGGGAGG
GCTCTTCAATTTCGCCCACCATGCCACCTGTAGGGTGGCTCTCAGGGCCT
TCTGCCTGTGATTTATAGGAATTCTAATTTCTTCTGGGTCAGGTACTGGC
CTGTATGCCTTTATCTCTTTGCTATTTTCTAGTATACAATTTGCCATTTG
AGTGTATACTTTGAACTTGCTTCTGCAACACTGCATTGTCGTATATAAAT
ATCCTTCCCCCCATTTTATGGTACCTTTCTTAACATCTCCCGCGATGCTT
TTTGTTATTTCTACTCTGCTTTTTCACATAAAAACCCCTCCCAAATTCAT
ATTGTCCCCCTTTTTTCTATATTAACCCGCTTTTATTTATCTTTTTTTAT
TCCTCCTCCTTATTTTCCTTATATTTTTTTTCTACN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCACCTGAGGAATACCGAATGGCTGAAAAGCACATGAAAAAAT
GTTCAACATCCTTAATCATCAGAGAAATGCAAATTAAAACAACCCTGAGA
TTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCTAGGATGTAGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTTCTC
AGAAAACGGGACATATTACTACTGAAGGATCCCGCAATACCTCTCCTGGG
CATATATCAGAAAATGTCCCAACCGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCCTATTTGTAATAGCCAGAAGCCAGAAAGAACCCAGAT
GCCCGTCAACAGAGGAATGGATACAAAAAAATGTGTACATTTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAATCCCTAGGCA
ATGGATGGACTTGGAGGGCATCATCCCGAGTGAGGGACACAAATCCCAAA
GAACTCCCCTGATATGTACTCCCTGATAAATGGTAATTACCCCCCAAATT
TAATTACCCGAGAAATAAGATAAATTTGGTACCCCCTGGAAATTGAAAAA
CAAAAACAAAGGGGGGACACCTTTCCCCTCTCTTAAAAGGGAAAAACTCC
CCTTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_m17.b1 MSMg01no365_m17.b1 CHROMAT_FILE:
MSMg01no365_m17.b1 PHD_FILE: MSMg01no365_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:23 2005
         (425 letters)



>mm_chr9_83456524_83457349
          Length = 826

 Score =  785 bits (406), Expect = 0.0
 Identities = 421/426 (98%), Gaps = 1/426 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaaaaagtcattctgttaatgagatgaagtctctgtatgagggtcagagggcctggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaaaaaagtcattctgttaatgagatgaagtctctgtatgagggtcagagggcctggca 260

                                                                       
Query: 61  gagtcccattgtccctcagtgttaacacccaaatgtctggatgcttgacctggcacctgg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtcccattggccctcagtgttaacacccaaatgtctggatgcttgacctggcacctgg 320

                                                                       
Query: 121 gcagtctgacctgtttctggtctgtctgtgtagctttctctcgccataaatacaccaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagtctgacctgtttctggtctgtctgtgtagctttctctcgccataaatacaccaggc 380

                                                                       
Query: 181 ttctcctccaccctggctggtcctgtggtcctctccaccttgtctgaggactccctatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctcctccaccctggctggtcctgtggtcctctccaccttgtctgaggactccctatgt 440

                                                                       
Query: 241 gacatgcagtcttattcccttcgctcttcaaagcatggggcagggctgtttccccacgct 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacatgcagtcccattcccttcgctcttcaaagcatggggcagggctgtttccccacgct 500

                                                                       
Query: 301 ccctttgcctctctcttcttgctgtccaaagtgggagggctcttcaatttc-gcccacca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 501 ccctttgcctctctcttcttgctgtccaaagtgggagggctcttcaatttcagcctacca 560

                                                                       
Query: 360 tgccacctgtagggtggctctcagggccttctgcctgtgatttataggaattctaatttc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgccacctgtagggtggctctcagggccttctgcctgtgatttataggaattctaatttc 620

                 
Query: 420 ttctgg 425
           ||||||
Sbjct: 621 ttctgg 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 826
Length adjustment: 9
Effective length of query: 416
Effective length of database: 817
Effective search space:   339872
Effective search space used:   339872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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