BAC Information

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BAC

Clone NameMSMg01-366A01
Chromosome9 (Build37)
Map Location 120,864,532 - 120,987,991
singlet/doubletdoublet
Overlap geneCtnnb1, Ulk4
Upstream geneTtc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010
Downstream geneTrak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366A01.T7 (MSMg01no366_a01.b1)MSMg01-366A01.TJ (MSMg01no366_a01.g1)
ACCAG473823AG473824
length728724
length of high quality
(start - end)		602 (55 - 656)616 (83 - 698)
definitionCHROMAT_FILE: MSMg01no366_a01.b1 PHD_FILE: MSMg01no366_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:42 2005CHROMAT_FILE: MSMg01no366_a01.g1 PHD_FILE: MSMg01no366_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,987,590 - 120,987,991)(120,864,532 - 120,865,147)
sequence
NNNNNNNNTCCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAAGGAGACTGCCTTCCAGACACAGCAGGACAGATGC
TCTTGGAACTCACAGTGATGGTGACAGCATGCAAAACCTATACAACCTAG
GTGACGAAAATCCCAGCATGGAGAGAGGGTGTGGTCATGAGTCCCACCTC
TAGCTGAGGAGGTATTGGCAAATGAGAGCTGCCTGGAGAGAGTCAGCTTT
TCCTTCAGAGTGTGCCTCCTGGCAGGTCAACTGCTATCCAGGACCAGCCC
CCACTCCCCAGAGAATTTGGACAGAATAAATTGGATGGGTTTTAAAAAAA
TAGAGAGAGCAAGAAAGAGCATGAGGCTGGGTGGGTAGAGAGGTGTGGGA
GTGGATAGGGTCGTGGGCAGCTGTAGGAGGAAGGGTGAGTGTGATCTAAG
CACAGAGTGTAACATTCTCCAAGCACCGATACACTTGTTTATTTTAAAGA
AAGGGAAGTTAGTTTTCAGGGACCGTCCAGGTTAGTCAGGGAAGGCTGCC
AGCTACAGATGCCCACACTCATCTTGTACACATGGCCATGCCATGCTCTG
GAGGGCAGGGAGCTCTCAGATGGATAGCTGGAGGGGTTCTGAATCCAGTT
TTGAGATTGGGCCAGACTTACTGTTTACCAGACTTCCCAGTTAGGGCCTT
GTCTCTTATTGCTGAGGAGTGGAAAAAA

NNNNAAACAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTAACCTCACTTGCA
ATAATTACAAAAACAAGATGATGGTGTGCCAAGTGGGTGGCATAGAGGCT
CTTGTACGCACCGTCCTTCGTGCTGGTGACAGGGAAGACATCACTGAGCC
TGCCATCTGTGCTCTTCGTCATCTGACCAGCCGGCATCAGGAAGCCGAGA
TGGCCCAGAATGCCGTTCGCCTTCATTATGGACTGCCTGTTGTGGTTAAA
CTCCTGCACCCACCATCCCACTGGCCTCTGATAAAGGTGAACTGTTAGCA
GGGAGCTCTGTTGGGCATAGAGATCGTCTGCTGGGATGGATGGCTGGGAA
TAGGTGGTGGGACCCGAAGCGTCCATTTCACTCAACACTGCTTGTGCTTT
GTTGTGTTGTCTACTGATTCTTTCCTCTGTAGGCAACTGTTGGATTGATT
CGAAACCTTGCCCTTTGCCCAGCAAATCATGCGCCTTTGCGGGAACAGGG
TGCTATTCCACGACTAGTTCAGCTGCTTGTACGAGCACATCAGGACACCC
AACGGCGCACCTCCATGGGTGGAACGCAGCAGCAGTTTGTGGTAGGTAGA
TCTTTATGAAACATGGCTGTTGTAAATGGGGTGGGGTAAATGCAATCTCC
ATGTGCTGTCTCTACCTTCCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_a01.b1 MSMg01no366_a01.b1 CHROMAT_FILE:
MSMg01no366_a01.b1 PHD_FILE: MSMg01no366_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:42 2005
         (602 letters)



>mm_chr9_120986990_120987991
          Length = 1002

 Score =  731 bits (378), Expect = 0.0
 Identities = 396/402 (98%)
 Strand = Plus / Minus

                                                                        
Query: 201  tcagagtgtgcctcctggcaggtcaactgctatccaggaccagcccccactccccagaga 260
            ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 tcagaatgtgcctcctggcaagtcaactgctatccaggaccagcccccactccccagaga 943

                                                                        
Query: 261  atttggacagaataaattggatgggttttaaaaaaatagagagagcaagaaagagcatga 320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942  atttggacagaataaattggatgggttttaaaaaaatagagagagcaagaaagagcatga 883

                                                                        
Query: 321  ggctgggtgggtagagaggtgtgggagtggatagggtcgtgggcagctgtaggaggaagg 380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882  ggctgggtgggtagagaggtgtgggagtggatagggtcgtgggcagctgtaggaggaagg 823

                                                                        
Query: 381  gtgagtgtgatctaagcacagagtgtaacattctccaagcaccgatacacttgtttattt 440
            |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 822  gtgagtgtgatctaagcacagagtgtaacattctccaagcattgatacacttgtttattt 763

                                                                        
Query: 441  taaagaaagggaagttagttttcagggaccgtccaggttagtcagggaaggctgccagct 500
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 762  taaagaaagggaagttagttttcagggaccatccaggttagtcagggaaggctgccagct 703

                                                                        
Query: 501  acagatgcccacactcatcttgtacacatggccatgccatgctctggagggcagggagct 560
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 702  acagatgcccacactcatcttgtacacatggccatgccatgctctggagggcagcgagct 643

                                                      
Query: 561  ctcagatggatagctggaggggttctgaatccagttttgaga 602
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642  ctcagatggatagctggaggggttctgaatccagttttgaga 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no366_a01.g1 MSMg01no366_a01.g1 CHROMAT_FILE:
MSMg01no366_a01.g1 PHD_FILE: MSMg01no366_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:42 2005
         (616 letters)



>mm_chr9_120864332_120865347
          Length = 1016

 Score = 1183 bits (612), Expect = 0.0
 Identities = 615/616 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctaacctcacttgcaataattacaaaaacaagatgatggtgtgccaagtgggtggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctaacctcacttgcaataattacaaaaacaagatgatggtgtgccaagtgggtggca 260

                                                                       
Query: 61  tagaggctcttgtacgcaccgtccttcgtgctggtgacagggaagacatcactgagcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaggctcttgtacgcaccgtccttcgtgctggtgacagggaagacatcactgagcctg 320

                                                                       
Query: 121 ccatctgtgctcttcgtcatctgaccagccggcatcaggaagccgagatggcccagaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatctgtgctcttcgtcatctgaccagccggcatcaggaagccgagatggcccagaatg 380

                                                                       
Query: 181 ccgttcgccttcattatggactgcctgttgtggttaaactcctgcacccaccatcccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgttcgccttcattatggactgcctgttgtggttaaactcctgcacccaccatcccact 440

                                                                       
Query: 241 ggcctctgataaaggtgaactgttagcagggagctctgttgggcatagagatcgtctgct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 ggcctctgataaaggtgaactgttagcagggagctctgttgggcatagagatggtctgct 500

                                                                       
Query: 301 gggatggatggctgggaataggtggtgggacccgaagcgtccatttcactcaacactgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggatggatggctgggaataggtggtgggacccgaagcgtccatttcactcaacactgct 560

                                                                       
Query: 361 tgtgctttgttgtgttgtctactgattctttcctctgtaggcaactgttggattgattcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgctttgttgtgttgtctactgattctttcctctgtaggcaactgttggattgattcg 620

                                                                       
Query: 421 aaaccttgccctttgcccagcaaatcatgcgcctttgcgggaacagggtgctattccacg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaccttgccctttgcccagcaaatcatgcgcctttgcgggaacagggtgctattccacg 680

                                                                       
Query: 481 actagttcagctgcttgtacgagcacatcaggacacccaacggcgcacctccatgggtgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actagttcagctgcttgtacgagcacatcaggacacccaacggcgcacctccatgggtgg 740

                                                                       
Query: 541 aacgcagcagcagtttgtggtaggtagatctttatgaaacatggctgttgtaaatggggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacgcagcagcagtttgtggtaggtagatctttatgaaacatggctgttgtaaatggggt 800

                           
Query: 601 ggggtaaatgcaatct 616
           ||||||||||||||||
Sbjct: 801 ggggtaaatgcaatct 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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