Query= MSMg01no366_f24.b1 MSMg01no366_f24.b1 CHROMAT_FILE:
MSMg01no366_f24.b1 PHD_FILE: MSMg01no366_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:12 2005
(506 letters)
>mm_chr9_8871310_8872216
Length = 907
Score = 818 bits (423), Expect = 0.0
Identities = 462/475 (97%), Gaps = 1/475 (0%)
Strand = Plus / Minus
Query: 5 gaattctgtaagcattcaataaaaatataaaattggggaatcgtaggtttgctgtttag- 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaattctgtaagcattcaataaaaatataaaattggggaatcgtaggtttgctgtttaga 416
Query: 64 aaaaaaaatgaactgaaatgacaggaaaacaacatcctatgagtagcccatggactgtca 123
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 415 aaaaaaaatgaactgaaatgacagaaaaacaacatcctatgagtatcccatggactgtca 356
Query: 124 tccccactgtgctgacatcacatgacgtgtgctcatcagaacatgagcagtcacgcagac 183
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 355 tccccactgtgctggcatcacatgacgtgtgctcatctgaacatgagcagtcacgcagac 296
Query: 184 actgctggttcagtaggcatgctttatgcatctcatggacttactgtctccaacttcttg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 actgctggttcagtaggcatgctttatgcatctcatggacttactgtctccaacttcttg 236
Query: 244 ccactacaaataactcaggaaagctgtctagattttttttttagtaaaaaaatatttaat 303
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 235 ccactacaaataactcaggaaagctgactagattttttttttagtaaaaaaatatttaat 176
Query: 304 tttttattttatctattcttctgcagttggtgaggataaaatagaacgccactgatgtaa 363
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 175 tttttattttatctattcttctgcagttggtgaggataaaatagaaccccactgatggaa 116
Query: 364 ggtattttaacaaagagatagaagaaaaatcagcagaaattgagagaacatctgtaatta 423
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 115 ggtattttaacaaagagatagaagtaaaatcagcagaaactgagagaacatctgtaatta 56
Query: 424 aaagctcaggggagagagaaagcacagtcaacaaagagagttccaggatattcag 478
| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 55 agagctcaggggagaaagaaagcccagtcaacaaagagagttccaggatattcag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 907
Length adjustment: 10
Effective length of query: 496
Effective length of database: 897
Effective search space: 444912
Effective search space used: 444912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_f24.g1 MSMg01no366_f24.g1 CHROMAT_FILE:
MSMg01no366_f24.g1 PHD_FILE: MSMg01no366_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:12 2005
(442 letters)
>mm_chr9_8693855_8694695
Length = 841
Score = 808 bits (418), Expect = 0.0
Identities = 436/442 (98%), Gaps = 1/442 (0%)
Strand = Plus / Plus
Query: 1 actcacctgctgcgatggggttcctgactaccttgaacacgtgtgttatttctcaggctt 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcacctgccgcgatggggttcctgactaccttgaacacgtgtgttatttctcaggctt 260
Query: 61 gaaacttagggatccttggaggtctaccctcactacagactggattgatgagtagcaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaacttagggatccttggaggtctaccctcactacagactggattgatgagtagcaggt 320
Query: 121 gactgattcatttgtgatcccataaatatcctccaagtgctgtgtaccctagaggctcac 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 gactgattcatttgtgatcccataaatatcccccaagtgctgtgtaccctagaggctcac 380
Query: 181 ctgggtgaggctgataacaaggaaaacttttgccttcccatggacctggaagccaggagg 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 ctgggtgaggctgataacaaggaaaacttttgccttcccatggacatggaagccaggagg 440
Query: 241 ctgaagacccaccatcagtaaaattacatcgttactccaaggaatcatgaagacaagtta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaagacccaccatcagtaaaattacatcgttactccaaggaatcatgaagacaagtta 500
Query: 301 gtaagtcagttttaagtaggaaaatatctgaagatggcagagaaatgagtaaagcagatg 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gtaagtcagttttaagtaggaaaatatctgaagatggcagagaagtgagtaaagcagatg 560
Query: 361 gaaaatgtaccaggcaggaagagcctaagcaaaagactcttaggccagagcacaggatgg 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 gaaaatgtaccaggcaggaagagcctaagcaaaagactcttaggtcagagcacaggatgg 620
Query: 421 gtatagtaggaactgaaggacc 442
||||||||| ||||||||||||
Sbjct: 621 gtatagtag-aactgaaggacc 641
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 841
Length adjustment: 9
Effective length of query: 433
Effective length of database: 832
Effective search space: 360256
Effective search space used: 360256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
