BAC Information

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BAC

Clone NameMSMg01-366I08
Chromosome9 (Build37)
Map Location 11,282,030 - 11,282,372
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665154, LOC100039970, LOC665178
Downstream geneLOC100039989, LOC622505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366I08.T7 (MSMg01no366_i08.b1)MSMg01-366I08.TJ (MSMg01no366_i08.g1)
ACCAG474214AG474215
length750750
length of high quality
(start - end)
340 (84 - 423)483 (85 - 567)
definitionCHROMAT_FILE: MSMg01no366_i08.b1 PHD_FILE: MSMg01no366_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:23 2005CHROMAT_FILE: MSMg01no366_i08.g1 PHD_FILE: MSMg01no366_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCGACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATACA
ATCCGCGGAATTCATGCCTTTTTCCCAAAAACATAGAAGGCAGATTTTAT
TTTTAAATATATAATGCATTATATGCTGTATTATATTTCATGGATTGCTA
ATGTAAGAGTGACACTTAGAATACTCCTTTCTGCAAACATTCCCAGGTAG
CTGTGGAACCAAACAATTCGTTTCAAAGTGTTTGGAAAGAAGATACAAAA
ATTTTGCAGATGTATAAAACGAACTTTCCATCAGGTATGAGTCTTGCAGT
GAACTATTTCCCATTTCGCATAAAGATTTTCTCATTTTATTTCAATCTTG
CTGGTTTTCAAAGCTCCTCTCTAGCTTCAGTGGACACTCAGCGACTCACA
GTACGGGTATGCTATGGCCTTTCGAACCAAATCTCTGAGCTGTTCAAATG
TTCCTTATGAGGACACGAATTCTTGGAGATCAGGTGGCTAATTCACACCA
CTTTATTCGCTTACATGTGCTAGTCGCTAAAATATTAACTAATGTTTCCT
TAATGCTAAGTACTCATTTCTTACTCCAATTTGTGATTTGAAATCCCCAC
CCAGTAAATGATGGCATTAGTAGAAACCGATATTGTCAGATGTTTTGCCC
CCTGAAAACAAATTTTATTATTGGAGGTTCCCCCTTTAAAAACCACTTTG
GAAACAATTGGTTTTTTTGCTTCACGTATAACCCAACCCATCTTATTTTG

NNNNNNNNCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACACCCTACTCTCAT
TAATGGACATATCCTGGAAACAAAAATTAAACAGAGACACAGTGAAACTA
ACAGAAGTTATAAAAGAAGTGGATTTAACTGATATCGATAGGACATTCCA
TCCTAAAACAAAAGAATATACCTTCTTCTCAGCACCTCATGGTACCTTCT
CTAAAATTGACCATATAATTGGTCACCAACAGATACAAAAATTTTGAAAT
ATTCCCATACACTCTATCAGATCACAATGGACTATTGATGATCTTCAATA
ACAACATAAATAATAGAAAGCCCACATTCTCATGGAAGCAAAACAACACT
CTACTCAATGAAAGCTTGATCCAGGAAGGAAGAAAGAAAGAAATTAAAGA
CTTTTTAGAGTTGAGTGAAAGTAAAGCCATAACATATCAAACTTATGGGA
CACAAGGAAAGCAGTCCTGAGAGGAAAACTCATAGCTCTGAGTACCTCGA
ANAAGAAACAAGAGACAGCATACCCTAGCAGCTTGACAGCACACCTAAAA
GCTCTAGAACAAAAGGAAGAAAATTCACCCAAAAGGAGTAGACAGGAGGA
AGTAATCCAACTTAAGGTTGAAATCACCCAAGTGGGAACCAAAAGGAATA
TTCCTTAGAATCCCTCCTTCTAGGGAGGTGGGTTTCTTGTAAAAAAAAAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_i08.b1 MSMg01no366_i08.b1 CHROMAT_FILE:
MSMg01no366_i08.b1 PHD_FILE: MSMg01no366_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:23 2005
         (340 letters)



>mm_chr9_11281830_11282573
          Length = 744

 Score =  582 bits (301), Expect = e-170
 Identities = 331/345 (95%), Gaps = 8/345 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaaggcagattttatttttaaatatataatgcattatatgctgtattatatttcatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaaggcagattttatttttaaatatataatgcattatatgctgtattatatttcatgg 260

                                                                       
Query: 61  attgctaatgtaagagtgacacttagaatactcctttctgcaaacattcccaggtagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgctaatgtaagagtgacacttagaatactcctttctgcaaacattcccaggtagctg 320

                                                                       
Query: 121 tggaaccaaacaattcgtttcaaagtgtttggaaagaagatacaaaaattttgcagatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaaccaaacaattcgtttcaaagtgtttggaaagaagatacaaaaattttgcagatgt 380

                                                                       
Query: 181 ataaaacgaactttccatcaggtatgagtcttgcagtgaactatttcccatttcgcataa 240
           | ||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||
Sbjct: 381 agaaaacgaactttccatcaggtatg--tcttgcagtgaactatttcccatttctcataa 438

                                                                       
Query: 241 agattttctcattttatttcaatcttgctggttttcaaagctcctct------ctagctt 294
           ||||||||||| |||||||||||||||||||||||||||||||||||      |||||||
Sbjct: 439 agattttctcagtttatttcaatcttgctggttttcaaagctcctctatagctctagctt 498

                                                        
Query: 295 cagtggacactcagcgactcacagtacgggtatgctatggccttt 339
           ||| |||||||||| |||||||||||||||||| |||||||||||
Sbjct: 499 cagcggacactcagtgactcacagtacgggtatactatggccttt 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 744
Length adjustment: 9
Effective length of query: 331
Effective length of database: 735
Effective search space:   243285
Effective search space used:   243285
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)