BAC Information

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BAC

Clone NameMSMg01-366N08
Chromosome9 (Build37)
Map Location 12,686,929 - 12,687,246
singlet/doubletsinglet
Overlap geneLOC100039680
Upstream geneLOC100039989, LOC622505
Downstream geneLOC665285, LOC100039729, LOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366N08.T7 (MSMg01no366_n08.b1)MSMg01-366N08.TJ (MSMg01no366_n08.g1)
ACCAG474452AG474453
length760752
length of high quality
(start - end)
249 (76 - 324)339 (81 - 419)
definitionCHROMAT_FILE: MSMg01no366_n08.b1 PHD_FILE: MSMg01no366_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:47 2005CHROMAT_FILE: MSMg01no366_n08.g1 PHD_FILE: MSMg01no366_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGACCTAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTAACTGTTCCATACCAAATGACTGAAAAGCAAATAAA
AAATTGTTCTACATCCTTAATCATCAGGGAAATTCAAATCCAACAACCCT
GAGATTCTACCTTACACCAGTCAGAGTGGTTAAGATAAAAAACTCAGGTG
ACAGCAGATGCTGGAGACGTTGTGGAGAAAGAGGAACACTCCTCCATTGC
TGGTGGGATGGCAAGCTGGTACAACTACTCTGGAAATCAGTCTGGCGGTT
CTTCAGAAAATTGGACATATTTTTACTATATATACCCAGCAATAGCACTC
CTTGGCATATACCCAGAAGATGCTGCAAATTGTAATAAGGACACTTACTA
TACTATGTTCACAGCAGCCTTATCCACAACAGCAAGAAGCTAGAAAGAAC
CCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATATGGTACATTTAC
ACAATGGAGTACTACTCCGCAATTAAATACCATGAATTCATTAAATTTCT
TAGACCAATGGATGGAACTGGAGGATATCATCCATGTGAGGTAATCCCCT
TCCCAAAGAATACCCTTGATATTGTTCCCCCTGATAACCGGAAATTTTTT
CCCACAGTCCTGAATCCTCCCTAACCATTTTGCCAAAAAATTGTAGCTCC
TTTAAAAAAGATAGTTGGGATCCCTCTTTTCCCTTTCTTTATAGCGCGCT
TTTTTTTTTN
TTTTCTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTCTAGTGATCTGCTGGT
GTGTCCTAAGTCTCAAGGAATGTTTCTGAGGAGTAGTTAGAAATTCAGTT
CTAGACCTAGAAGAGGATTGTACCTTTGAAAGAGGCTCACTCATTAACTT
TAATAATTTTGTTTTATGTATGTATATATGCATATATGTGTACATATATA
TTCATAAATACGTATATATCTATGTGTCTGTCATCTATCTTCTTGCATTC
TTCTAAGTATGCATAATGTTCATATATATATGATTTTAAGGCAGACCATT
TAGGGTCTCTTCTTGAAGAAGACTATTTTTAATATTTATTTTTAATTAAT
TTTATTGGTTATTTCATTTCCCCCCACCCCAAATGTTATCCTCTTCCCAG
TTTTCCCTCCAGAAATTTCCATCGCCCCTGCTTCAATGTGTGTGCTCTCC
CATTCACCCGCTTACTCCCACCTCACCGCCCTAGTATTTCCCTACATTAG
GGCCTCCAGGCTTTCACAAGACAGATTAATGCCTGAATAAGGTGGAGCCC
TGGATAATTTCCCTAATATATTTTTTTGGTTGGTGGTTTAATCCCTCGGA
CCCCTTGGGGTTCTTTTTGTGTTCTCCCTTTTTGTTCCTCTCTTGTTACC
TTCCTTTCCTTCATTATTTTTTTGTTTTCCTCCCTCTTTTGTCTCCTTTT
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_n08.g1 MSMg01no366_n08.g1 CHROMAT_FILE:
MSMg01no366_n08.g1 PHD_FILE: MSMg01no366_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:47 2005
         (339 letters)



>mm_chr9_12686929_12687667
          Length = 739

 Score =  592 bits (306), Expect = e-173
 Identities = 315/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactctagtgatctgctggtgtgtcctaagtctcaaggaatgtttctgaggagtagttag 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 318 cactctagtgatctgctggtgtgtcctaagtctcagggaatgtttctgaggagtagttag 259

                                                                       
Query: 61  aaattcagttctagacctagaagaggattgtacctttgaaagaggctcactcattaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaattcagttctagacctagaagaggattgtacctttgaaagaggctcactcattaactt 199

                                                                       
Query: 121 taataattttgttttatgtatgtatatatgcatatatgtgtacatatatattcataaata 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 taataactttgttttatgtatgtatatatgcatatatgtgtacatatatattcataaata 139

                                                                       
Query: 181 cgtatatatctatgtgtctgtcatctatcttcttgcattcttctaagtatgcataatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 cgtatatatctatgtgtctgtcatctatcttcttgcattcttctaagtatgcataatgtt 79

                                                                       
Query: 241 catatatatatgattttaaggcagaccatttagggtctcttcttgaagaagactattttt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  catatacatatgattttaaggcagaccatttagggtctcttcttgaagaagactattttt 19

                             
Query: 301 aatatttatttttaatta 318
           ||||||||||||||||||
Sbjct: 18  aatatttatttttaatta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)