BAC Information

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BAC

Clone NameMSMg01-367A20
Chromosome9 (Build37)
Map Location 50,229,233 - 50,397,434
singlet/doubletdoublet
Overlap geneLOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18
Upstream geneAnkk1, Ttc12, Ncam1, EG667975, LOC100042806, LOC100043346
Downstream geneSdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367A20.T7 (MSMg01no367_a20.b1)MSMg01-367A20.TJ (MSMg01no367_a20.g1)
ACCAG474616AG474617
length782779
length of high quality
(start - end)		512 (48 - 559)466 (75 - 540)
definitionCHROMAT_FILE: MSMg01no367_a20.b1 PHD_FILE: MSMg01no367_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:05 2005CHROMAT_FILE: MSMg01no367_a20.g1 PHD_FILE: MSMg01no367_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,229,233 - 50,229,740)(50,397,088 - 50,397,434)
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGGAAAGATCTCATTAGTTAAGAGCATCAGCTGCTTTTCCAGG
AGGCCTGGGTTCAATAACCAACACTCCACGTAGTGGCTAATGACTGTCTT
AACACCAGTTCCAGGGGAATCTGATGCCCTCTTCTGGCCGCTATGGGTAC
TGCATGCACATGGGATGCCTACATACAGGTGAGATACACAAAGGCATAAA
ATGGAAATAAAAAATAAATAGAAAGAGAGGGGCAAGCACACCAGCTCTCC
AGTGGGTCTTCAGCAGGCCTGCGCCTCGAACTACCAGCCACATGCTGCCT
GACTTTCCCCAGCTCCTTTTCACACATAAACCCATGGCTCCTGAGCCCTT
ATTCTAGGCCAGGTCTCCAGTAAACATCAACTAAGACACATAGCTGGACT
ACTCTCACCCCTTGCATGCTGAGACCCATCTTAGAACATAATTAGACATT
TCCATCAAATGCCACTGACTGGAAAACGTGAAACCTCTTAATGTCAGTAA
CTAGGCTAAGGGACAGACGTTAGCTGTTTCTAATTAGCAGGCTATAGCTA
CTTCTCATTGCCACTTCCGGAAGCTGCAGGTCTCCACTTCCCCCATGGGT
AGCCCTCCAGTTGGGATTGCTCAAAAACCTCCTCTTGTTCCCAGAAGCCA
GAACACCCCTTTTTTCTGGCCGGTTTTGTGAAAAAAACCCCCCGAAATTG
GTGCTTTCAAACCGGCGAGGACACTCTAAAAN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCTTTGTCCAGCAGCATAGGCCAGC
ATAGGCCAGTGGGATGTTCTATGAGTTGAGAAGAAGAAATCTGACGTTTG
ACGAGGATGTAGGCTTCAAGTTCAAGGGTCAGAATGTGAGCATTGGAAAC
ACAAAGATTTTTTTTCTGATAAGCCAGGCATGGTGGTTCACACCTTCAAT
TCCAGCATCCAGGAGGCAGAAGTTGGCAGATCACTGTGAGTTCAAGGCTA
GCCTGGTCTACATGAGCCAGGCATGGTGGTTCACACCTTCAATTCCAGCA
TCCAGGAGGCAGAAGTTGGCAGATCACTGTGAGTTCAAGGCCAGCCAAGT
CTACATAGTGAAACCGTGACTCAAAAAAAAAAAAAAAAAAAAGCAAACAA
ACAAAAAACAAAAAAACCCAAGTCCTAATTATTTATAAGTGTAATTGAAT
GCCTGGAAAGGCGGAGGTTTAAGAGTACGCTGCTTCTTGACTTAAGTCGA
GGCTTTGAACCCCCTCCAGCAGTTACTAGTTTAAGAAGGCCTGAGTGAGG
TTGGCCGATCTTGTCCTTAACCCCTAGATCTGGGAGAACGAATCCTGAAA
ATCCGGTGTTCAGGTTTTTTTTTCTTTTGGAAAAAAGATCAGGCCCCCTT
AACTTTATTACTTATATTTTATTTTTCCTATTCTTTTTCCTTTACCTTTT
CCCTTTTCCTTTTCTCTTTTCTTAGTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_a20.b1 MSMg01no367_a20.b1 CHROMAT_FILE:
MSMg01no367_a20.b1 PHD_FILE: MSMg01no367_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:05 2005
         (512 letters)



>mm_chr9_50229029_50229940
          Length = 912

 Score =  905 bits (468), Expect = 0.0
 Identities = 498/508 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggaaagatctcattagttaagagcatcagctgcttttccaggaggcctgggtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggaaagatctcattagttaagagcatcagctgcttttccaggaggcctgggtt 264

                                                                       
Query: 65  caataaccaacactccacgtagtggctaatgactgtcttaacaccagttccaggggaatc 124
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 caataaccaacactccatgtagtggctaatgactgtcttaacaccagttccaagggaatc 324

                                                                       
Query: 125 tgatgccctcttctggccgctatgggtactgcatgcacatgggatgcctacatacaggtg 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatgccctcttctggccactatgggtactgcatgcacatgggatgcctacatacaggtg 384

                                                                       
Query: 185 agatacacaaaggcataaaatggaaataaaaaataaatagaaagagaggggcaagcacac 244
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 385 agatacacaaaggcataaaatggaaataaaaaataaatagaaagaaaggggcaaacacac 444

                                                                       
Query: 245 cagctctccagtgggtcttcagcaggcctgcgcctcgaactaccagccacatgctgcctg 304
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 445 cagctctccagtgggtcctcagcaggcctgcgcctcgaactaccagccacatgctgcctt 504

                                                                       
Query: 305 actttccccagctccttttcacacataaacccatggctcctgagcccttattctaggcca 364
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 505 actttcctcagctccttttcacacataaacccatggctcctgagcccttattctaggccc 564

                                                                       
Query: 365 ggtctccagtaaacatcaactaagacacatagctggactactctcaccccttgcatgctg 424
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 ggtctccagtaaacatcaactaagacacgtagctggactactctcaccccttgcatgctg 624

                                                                       
Query: 425 agacccatcttagaacataattagacatttccatcaaatgccactgactggaaaacgtga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agacccatcttagaacataattagacatttccatcaaatgccactgactggaaaacgtga 684

                                       
Query: 485 aacctcttaatgtcagtaactaggctaa 512
           ||||||||||||||||||||||||||||
Sbjct: 685 aacctcttaatgtcagtaactaggctaa 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no367_a20.g1 MSMg01no367_a20.g1 CHROMAT_FILE:
MSMg01no367_a20.g1 PHD_FILE: MSMg01no367_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:06 2005
         (466 letters)



>mm_chr9_50397088_50397953
          Length = 866

 Score =  648 bits (335), Expect = 0.0
 Identities = 344/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctttgtccagcagcataggccagcataggccagtgggatgttctatgagttgagaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ttctttgtccagcagcataggccagcataggccagtgggatgttctatgagttgagaaga 288

                                                                       
Query: 61  agaaatctgacgtttgacgaggatgtaggcttcaagttcaagggtcagaatgtgagcatt 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 agaaatctgacgtttgatgaggatgtaggcttcaagttcaagggtcagaatgtgagcatt 228

                                                                       
Query: 121 ggaaacacaaagattttttttctgataagccaggcatggtggttcacaccttcaattcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ggaaacacaaagattttttttctgataagccaggcatggtggttcacaccttcaattcca 168

                                                                       
Query: 181 gcatccaggaggcagaagttggcagatcactgtgagttcaaggctagcctggtctacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 167 gcatccaggaggcagaagttggcagatcactgtgagttcaaggctagcctggtctacata 108

                                                                       
Query: 241 agccaggcatggtggttcacaccttcaattccagcatccaggaggcagaagttggcagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 agccaggcatggtggttcacaccttcaattccagcatccaggaggcagaagttggcagat 48

                                                          
Query: 301 cactgtgagttcaaggccagccaagtctacatagtgaaaccgtgact 347
           ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 47  cactgtgagttcaaggccagccaagtctacatagtgaaaccctgact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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