BAC Information

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BAC

Clone NameMSMg01-367A22
Chromosome9 (Build37)
Map Location 39,287,792 - 39,288,130
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1
Downstream geneOlfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367A22.T7 (MSMg01no367_a22.b1)MSMg01-367A22.TJ (MSMg01no367_a22.g1)
ACCAG474620AG474621
length796763
length of high quality
(start - end)		465 (48 - 512)428 (57 - 484)
definitionCHROMAT_FILE: MSMg01no367_a22.b1 PHD_FILE: MSMg01no367_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:06 2005CHROMAT_FILE: MSMg01no367_a22.g1 PHD_FILE: MSMg01no367_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATTCCAGTAACATGCTTACATAGTCTGAAATACAGACACACT
CATAGTACGCACTTTTATTCTCAAACAGTGAAGGTAATGTTAGTTTGTAG
AAGGATGCACACATGTTGGAAAGTAATGTTTATTTGAGTTGCAGATAAAG
TGATGAATAAAAGAAAGATTTAAAGGTATAGTATATGTCAAACTCTAACA
AGAACAGAGAGAAAAGGGAGGTGACAGAAGAGAGAACTGAAGAGAGACAG
AGACACAGAAACGAAGAGACAGCGACAGAAATACAGAGAGAAAGGCTGAG
ACAGAGACAGAGATAGAGTCAGATTTACTGTAAGTTTACAGAGACAGGTT
GAAGAGAGAACAAGCTAGACACAGGTGAAGACAGAGCTAGCCAGAGAATG
GAAAGGAGCCAGAAGATTAGAACAGAATTTTAGAGGTTGTTTTGGGTCAA
GTGGAGCAATTCAATCATGAGAGAAAACAGTTTAAATCAACCATCCTGTG
AGGGGAGTTTTGAGCCAGACAGCTGATTAAAAACGTAGTCAGAGTTCAGA
TAGATCTAAAAAAAGGTTAGGGTTTATCTTGAGCAAGTCTAAAAGGTTGA
AAAAAATCTCGGGCCACCTTATTTTTTTATAGAGGCTAAAATTTTCTAAG
ACTAGGCTGGATTTATCCCATGGAGGCGGTAACCTTCTCTATACACATTT
TTCTTTCCACATAAAGTTCAACTTATTCTTAGAACCGGGGTATGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCCAAACACCATATCTATCCAGTTGTGTTTTTTACTTTGCATTC
TGCAGGGCAGGCAGTCTACCTCTATCTTTCTATGCTGATGACCTATAGAA
AATTGTGTGCTTAACACTTAAATATACTTTTTGTTTGTTTGCTTTGTTTT
GTTTTTCGAGATAGAGTGTTTGTTGTGTGTGTAGCTCTGCTTTTTTGGGA
CTCAGTGTGTGGATGAGGCTGGTCTTGAGCTCAGAGAGACCCATCTGCTT
CTGCCTTCCAAGTTCTGGGATTAAAAGTGTGTGCCACAATCACAAGGCTT
TAAATATGTTTTAATATTAATTCATATTGATATTAAAAATTTTTTTTGAA
TCACTACCATTCATACTATTTCTGACATTGACATATTAATTTCTATTTTT
AAATTTTTAGATAGCAATTTANATACATTTGTCCTTTCCCTTCCTTACCT
CCAAACTCTGCCACATACCCCTTCCTTCTCATTTTCAAATTCTTTTCAAT
TTCATTAAATTTTAATTTATTAATTTTATTCAAATTAACTTAATTCAAAT
TAATCNAAACAAACNAACCCCACCCNCNCCCCCNACACTTCTTCACCCTT
CTCTTCCTTTTCTTTTCCTCCCTTCCTCTCTCCCCTACATTCACCATCTT
ACATTTTCCCTGTCCATCTTCACCTCATATCCCTATCTATAATTTCTATT
CTTCTCTCCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_a22.g1 MSMg01no367_a22.g1 CHROMAT_FILE:
MSMg01no367_a22.g1 PHD_FILE: MSMg01no367_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:06 2005
         (428 letters)



>mm_chr9_39287792_39288618
          Length = 827

 Score =  609 bits (315), Expect = e-178
 Identities = 331/339 (97%), Gaps = 6/339 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccaaacaccatatctatccagttgtgttttttactttgcattctgcagggcaggcagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cccaaacaccatatctatccagttgtgttttttactttgcattctgcagggcaggcagtc 280

                                                                       
Query: 61  tacctctatctttctatgctgatgacctatagaaaattgtgtgcttaacacttaaatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 279 tacctctatctttctatgctgatgacctatagaaaattgtgtgcttaacacttaaatgta 220

                                                                       
Query: 121 c----tttttgtttgtttgctttgttttgtttttcgagatagagtgtttgttgtgtgtgt 176
           |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ctttttttttgtttgtttgctttgttttgtttttcgagatagagtgtttgttgtgtgtgt 160

                                                                       
Query: 177 agctctgcttttttgggactcagtgtgtggatgaggctggtcttgagctcagagagaccc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 159 agctctgcttttttgggactcagtgtgtggatgaggctggtcttgagctcagagagatcc 100

                                                                       
Query: 237 atctgcttctgccttccaagttctgggattaaaagtgtgtgccacaatcacaaggcttta 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  atctgcttctgccttccaagttctgggattaaaagtgtgtgccacaatcacaaggcttta 40

                                                  
Query: 297 aatatgttttaatattaattcatattgatatt--aaaaa 333
           ||||||||||||||||||||||||||||||||  |||||
Sbjct: 39  aatatgttttaatattaattcatattgatattctaaaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 827
Length adjustment: 9
Effective length of query: 419
Effective length of database: 818
Effective search space:   342742
Effective search space used:   342742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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