BAC Information

Click to search

BAC

Clone NameMSMg01-367B22
Chromosome9 (Build37)
Map Location 109,818,663 - 109,818,966
singlet/doubletsinglet
Overlap genenone
Upstream geneUqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a
Downstream geneLOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367B22.T7 (MSMg01no367_b22.b1)MSMg01-367B22.TJ (MSMg01no367_b22.g1)
ACCAG474668AG474669
length790851
length of high quality
(start - end)
467 (47 - 513)304 (125 - 428)
definitionCHROMAT_FILE: MSMg01no367_b22.b1 PHD_FILE: MSMg01no367_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:11 2005CHROMAT_FILE: MSMg01no367_b22.g1 PHD_FILE: MSMg01no367_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGACCAGTCTAGGGTAAAGAATGGGACTTTGTTTCAAAAAGGA
GTAAAAGGATCATGCTGCTTTTATTCATGCTGAATATAATAATAACTAGA
AATCAGAATGTATTTTCATTCTAAAATTACCTTCTCCTGTGCATCCACAG
GAAGAGCTTATGTCCTGGACCCTGGAAACTGTGATCCTTTGTCCTTTAAG
ACAACAACTCAATGAACCCAACACTATGATAGAGTGCACACACACATACA
CCATGGACACATGCATGTATACATACTTTCACACACACACATACAAAATT
GATATATATGTATATATACACACAACCACAGTTTTTCAGCTCAGGTCTCT
TCTGATTCCGATTGAAAACGGCCTTTATGACTGCAGACTCCACCACTGGC
ATTTCTGCCACAGAGTTGCAGTTTAGATTCTTTTTTTTTTTTTTTAGAAT
TAATTTTTTAATTAGGNATTTTCGCCATTTACATTTCCAATGCTATCCAA
AAAGTCCCCAATAAATTACCCCCCCCCATTCCCCTACCCACCAATTCCAC
TTTTTTACCCTGGCGTTCCCCTGTATTGGGGCATAAAAAAGTTGGAAGAA
CCAAGGTGCCCTCTTTTCCCTTGAGGGGCATCTTTTGATACTTATGCCCC
CAAATCCATAAATCTGGGTTACGGGTTACAATAAATAAGTGTTTTCTCCC
AAAATGGTGCGAAACCCTTTAACTCTTTTGGCAATTTTCT
AAACCTTCCANCCCGCCCCATGCTACATTATCCCTTCTTTTATATATNTT
TAATTAATTTGTAATTCTGCCGTTCGCCTGTTTCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGTTGTTGGGCTTAGCAGCGAACAC
CTTTACCTGCTCAGCCATCTCTCTGTTCTCTGTCTCCCCAAAGAACTTTT
CTGAAAAGATCCCAGACTAGTTGCAGCCCTCCTTTATCCAGAAACTGCAA
CATCTCCATTCAGGCCCTCCCACAGGCTCCTGTAAGAACAGGGAGGACAG
AACGGCCCCATTATCAGAATTCCTGAGCTCAAAGGAGAACTCAAAAGTTT
TACACATACACATCAGCATCTTTCATCTTCACCAAAAAGTTGTATTTATT
CCTCCTCCAATAGATAAGAAACCAGGAGCTCATAGAGGTTATTCAACGTC
TCCAAGGTCACACAGTCTGAGCCAAGAAATTTGTCTCTGAGATATCTTAC
ACTCAGTAACTCAGTGTTTTCTCAGGTCCTGATTTTATTTACTTTCTATC
ACTTTTTTGTTCGTTCGCTTCTCTAGACAGGTTTATCTCCGTTGTAACCC
TGGCTTGTTCTTTCACCTACTTTGTATTTTCGGTCTGTTCTTCATTTTTA
TCTTTCTTGCCTTTCTTAGCCTTCTCCTAGTTGTTTGTTATTTATACACC
TGTTTACTATCTTTTACACGGCCTCCATTAATCCCCCCCTTTTCTTTACC
TCTTTTGCCTTCTTTTTTTTTTTTCTCCCTTTCTTTTTATCTCCTTCTCT
CGTACCCCTTTTTGCTACCCTTGACCGTTATCAACTTTTTGTTCTCCTCC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_b22.g1 MSMg01no367_b22.g1 CHROMAT_FILE:
MSMg01no367_b22.g1 PHD_FILE: MSMg01no367_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:11 2005
         (304 letters)



>mm_chr9_109818412_109819115
          Length = 704

 Score =  572 bits (296), Expect = e-168
 Identities = 302/304 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttgttgggcttagcagcgaacacctttacctgctcagccatctctctgttctctgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aggttgttgggcttagcagcgaacacctttacctgctcagccatctctctgttctctgtc 496

                                                                       
Query: 61  tccccaaagaacttttctgaaaagatcccagactagttgcagccctcctttatccagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tccccaaagaacttttctgaaaagatcccagactagttgcagccctcctttatccagaaa 436

                                                                       
Query: 121 ctgcaacatctccattcaggccctcccacaggctcctgtaagaacagggaggacagaacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ctgcaacatctccattcaggccctcccacaggctcctgtaagaacagggaggacagaacg 376

                                                                       
Query: 181 gccccattatcagaattcctgagctcaaaggagaactcaaaagttttacacatacacatc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 375 gccccattatcagaattcctgagctcaaaggagaactcaaaagttttacacacacacatc 316

                                                                       
Query: 241 agcatctttcatcttcaccaaaaagttgtatttattcctcctccaatagataagaaacca 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 315 agcatctttcatcttcaccaaaaagttgtatttattcttcctccaatagataagaaacca 256

               
Query: 301 ggag 304
           ||||
Sbjct: 255 ggag 252


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)