BAC Information

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BAC

Clone NameMSMg01-367C02
Chromosome9 (Build37)
Map Location 90,959,620 - 90,959,917
singlet/doubletsinglet
Overlap genenone
Upstream geneCtsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
Downstream geneEG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367C02.T7 (MSMg01no367_c02.b1)MSMg01-367C02.TJ (MSMg01no367_c02.g1)
ACCAG474676AG474677
length756842
length of high quality
(start - end)		311 (50 - 360)544 (169 - 712)
definitionCHROMAT_FILE: MSMg01no367_c02.b1 PHD_FILE: MSMg01no367_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:12 2005CHROMAT_FILE: MSMg01no367_c02.g1 PHD_FILE: MSMg01no367_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTCATACTCTCTTGTCAAACTAATTTCTACATGGCCATG
TCAAGCCTAAAAATAAATATTCCCTGAGTCAGAGTCTTCATTTCTAAAAG
CTCTGGTGTTGTATAAAAATTTTTATGCTTTTCTCTTGTTGGCCTGTATT
GCAATGGGTACATTGGCCATATCCTTCACATGAGTAAGAAAACTTATCAC
AATTTTTCCACTTCAAGAAAGATCTAATGATATCTTTGCTAACATATATA
TATGTGTGTGTGTGTGTGTATATATATATATATATATATATATATGAATG
ATATTTTATTCACATATATTTCTAAAGATATATATATTTCTATTTTCCTC
TCTCAAAAAAAACCTATATACCATTTCACACTCACCCTGTTTCTAAAAAA
CTTTTCTTTAACCCTACTCACCACTCAAAAATAAACATATATATATACAT
ATATACCGCGATATTATATATATACACACACAGTCTCAGACCATATATAT
ATTTATTTTAGTTATGTGTATATATATGTTTGATATCCGAGAGAGACTAT
GAAAATGTGTGTGCTCCCTCTATCCAGAGAGATTTATATGCGCGCGTGCC
TATTTCTGTTATATATATCATATCACTCTCCTCCCCCCTCTATTTTATTC
CCCCTTTCCTTTCCTACTTCACTCTCCTTTCATACTTTTCTTAATACACT
CATCTG

GAGGATGAATGGAGGGAGGGGGAGGAGTGAGGCATGGGGGAGAAGAGAGG
AGGAGTGAGGAGNAGGAGGNNGGTGTTGNNTGGGGGAGGANCACCAATGA
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTAGCTAGAGCAATTCAACAACAAAAGGAGAT
CAAGGGGATACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAG
ATCATATGATAGTATAGATAAGTGACCCTAAAAATCCCACCAGAGAACTT
CTAAACCTGATAAACAGGTTCAATGAAGTATCTGGATATAAAATTAACTC
ACACAAGTCAATGGCCTTTCTCTACACAAAGGATAAACAGGCTGAGAAAG
AAATTAGGGAAACAACACCCTTCTCAATAGACAGAAATAATATAAAATAC
CTTGGTGAGACTCTAACTAAGGAAGTGAAAGATCTGTAAGATAAAAACTT
CAAGTCTCTAAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAAATC
TCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTG
CCAAAAGTAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCA
ATTCTTCAACGAATTATAAAGAGCAATCTGCAAATTCATCTGGAATAACA
AAAAACCTAGGATAGTCTATACTCTTTCTCAGGATAAAAGAACCTCTGGT
GGAATCACCCTGCCTGACCCAAAGCTTTACTACCGAGTCCTTGTGATAAT
AACTGCATTGCACTGGGTATAGTGACACGACTATGTACACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_c02.b1 MSMg01no367_c02.b1 CHROMAT_FILE:
MSMg01no367_c02.b1 PHD_FILE: MSMg01no367_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:12 2005
         (311 letters)



>mm_chr9_90959416_90960126
          Length = 711

 Score =  534 bits (276), Expect = e-156
 Identities = 290/298 (97%), Gaps = 6/298 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttcatactctcttgtcaaactaatttctacatggccatgtcaagcctaaaaa 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttcaaactctcttgtcaaactaatttctacatggccatgtcaagcctaaaaa 264

                                                                       
Query: 65  taaatattccctgagtcagagtcttcatttctaaaagctctggtgttgtataaaaatttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaatattccctgagtcagagtcttcatttctaaaagctctggtgttgtataaaaatttt 324

                                                                       
Query: 125 tatgcttttctcttgttggcctgtattgcaatgggtacattggccatatccttcacatga 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 tatgcttttctcttgttggcctgtattgctatgggtacattggccatatccttcacatga 384

                                                                       
Query: 185 gtaagaaaacttatcacaatttttccacttcaagaaagatctaatgatatctttgctaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaagaaaacttatcacaatttttccacttcaagaaagatctaatgatatctttgctaac 444

                                                                     
Query: 245 atatatatatgtgtgtgtgtgtgtgt------atatatatatatatatatatatatat 296
           ||||||||||||||||||||||||||      ||||||||||||||||||||||||||
Sbjct: 445 atatatatatgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatat 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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