BAC Information

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BAC

Clone NameMSMg01-367C17
Chromosome9 (Build37)
Map Location 22,556,458 - 22,556,897
singlet/doubletsinglet
Overlap geneBbs9
Upstream geneSpc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, LOC100040805
Downstream geneBmper, LOC100040866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367C17.T7 (MSMg01no367_c17.b1)MSMg01-367C17.TJ (MSMg01no367_c17.g1)
ACCAG474706AG474707
length755780
length of high quality
(start - end)		452 (18 - 469)476 (77 - 552)
definitionCHROMAT_FILE: MSMg01no367_c17.b1 PHD_FILE: MSMg01no367_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:14 2005CHROMAT_FILE: MSMg01no367_c17.g1 PHD_FILE: MSMg01no367_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATATCGAGAGGTCCGCGGAATCATTTTTATCTGGCTGGTGCAGGA
TGTGTAGGCAGACACACAATTTTATTAGTGCCTAGTGGGGTTGTTGTTGT
TTTAGTTCGGAGTGGACAGACTACAGTTACGGCTGGTGAGCCGAGAGCAA
GGAGCTCAGTCCCCTTGCCTCCTGGCTGCCAGGTTCCTAGCCTCAGCCTG
CTGTTGGGAGAGTTCTAGGTCCCAGCTCTGTGCAGACCTCTGAGTATTTC
CCCAGATCAGGCATCTCTTCCGGTGTGCCCGACCTTTCTAGCTATGGTTG
GTATCTTTAACTATCTGTGGTGCCATCTGTAACCCGAGGCATCTCCTGCC
TGCACCACTGTCTACCTTAAGAGGCTCCAATCTCTCCTTTGCTCTTAAGA
AGGCAGATGGGGTAGGGGCTTTGAATTCTGATGGTCACTTACCTCCACCC
CTCGGATCCCTGCTCTGTAGTGTGAACTCTGGAGGAGGCTCCGCGTTGTT
CCTTATCAACAGCCTCATTGCCACTCATGCAGAGTGCTCAAAGCTACTGG
CTGGTTGCATACTGGGCCGGGTTACTTTTTTTTTAAAACTGCTTTTTTAT
TTCCATCCTAACGGGCCCTTTTCTGGGGCATGGTTTAAATATGATTCCCT
GGATATCCCATAAACCTCTTGGGTTTCTTATTTTTGTTGGCCCCGCTACG
GGCACCCCTTGAAAAACTTTCTCTTAATTCTCCGCTTTCTCTTTTTATGT
GCTTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCCCAAGGAACTCACACAATATGTACTCCCTGATAAG
GGGATATTAGCCCCAAAACTATGATATCCAAGAAATAAAAAACATTTTCC
TAACACCTGGAATTCTCAAAAAAGAAGAATGAGAGGGGGGAACTTTTGCC
CCCCTTTAAAAGGGGAAATAAAACCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_c17.b1 MSMg01no367_c17.b1 CHROMAT_FILE:
MSMg01no367_c17.b1 PHD_FILE: MSMg01no367_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:14 2005
         (452 letters)



>mm_chr9_22556246_22557097
          Length = 852

 Score =  812 bits (420), Expect = 0.0
 Identities = 435/440 (98%)
 Strand = Plus / Plus

                                                                       
Query: 13  ttttatctggctggtgcaggatgtgtaggcagacacacaattttattagtgcctagtggg 72
           ||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 213 ttttagctggctggtacaggatgtgtaggcaggcacacaattttattagtgcctagtggg 272

                                                                       
Query: 73  gttgttgttgttttagttcggagtggacagactacagttacggctggtgagccgagagca 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gttgttgttgttttagttcggagtggacagactacagttacggctggtgagccgagagca 332

                                                                       
Query: 133 aggagctcagtccccttgcctcctggctgccaggttcctagcctcagcctgctgttggga 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aggagctcagtccccttgcctcctggctgccaggttcctagcctcagcctgctgttggga 392

                                                                       
Query: 193 gagttctaggtcccagctctgtgcagacctctgagtatttccccagatcaggcatctctt 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gagttctaggtcccagctctgtgcagacctctgagtatttccccagatcaggcatctctt 452

                                                                       
Query: 253 ccggtgtgcccgacctttctagctatggttggtatctttaactatctgtggtgccatctg 312
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cccgtgtgcccgacctttctagctatggttggtatctttaactatctgtggtgccatctg 512

                                                                       
Query: 313 taacccgaggcatctcctgcctgcaccactgtctaccttaagaggctccaatctctcctt 372
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 taacccgaggcatctcctgtctgcaccactgtctaccttaagaggctccaatctctcctt 572

                                                                       
Query: 373 tgctcttaagaaggcagatggggtaggggctttgaattctgatggtcacttacctccacc 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgctcttaagaaggcagatggggtaggggctttgaattctgatggtcacttacctccacc 632

                               
Query: 433 cctcggatccctgctctgta 452
           ||||||||||||||||||||
Sbjct: 633 cctcggatccctgctctgta 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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