BAC Information

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BAC

Clone NameMSMg01-367H14
Chromosome9 (Build37)
Map Location 97,344,506 - 97,345,002
singlet/doubletsinglet
Overlap geneClstn2
Upstream geneRnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42
Downstream geneLOC667298, Nmnat3, Rbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367H14.T7 (MSMg01no367_h14.b1)MSMg01-367H14.TJ (MSMg01no367_h14.g1)
ACCAG474933AG474934
length786759
length of high quality
(start - end)
479 (70 - 548)497 (75 - 571)
definitionCHROMAT_FILE: MSMg01no367_h14.b1 PHD_FILE: MSMg01no367_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:39 2005CHROMAT_FILE: MSMg01no367_h14.g1 PHD_FILE: MSMg01no367_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCATTTGGCCAAGGATGGCCTTGAACTCTTGGTCATCTCCTG
CTCTGACATTATAGTTGTGTGCCACCAGAACCAGCCTGCTGGTCATCTGT
TGATAGGCATCTCATCGGATTCCATTATCTCGACTATTACAAAAAGTTCG
GCAATAAACACGTAGTTCTGTGGTGTGCACACTTAGTATTCTTCAGGACA
TGTGCCTAGTAATAACTTGATCAAATGAGGGTTCTAATTTTAGATTTTGC
CCCATACTGATTTCTATAGGGGCTGTACCAGATCACATGACCCTCGGCAA
TGTGTAAGAACTCTCTCCTCGAGAGTCCTTTGCCAGTAGCTGCTTTCTTT
CCAGTATCCACTTTGACTGGGGTGAGAGGGAATCTCAAAGCAGGTTTAAT
TTGCCTTTCCTGGAGCTCAATGCTTGGCCAGACATTCCTTGCTTCTCTAT
GTTTCTTCTTTGGAAACCCTATTTATTCAGTTCATCAATCCATTTGTTGG
TTGGATGCTTTGTTTTAAGAATGTTAAAAAGTCGGGNTTTCTTTTCCTTT
TCTTTCCTTTCCTTTCCTTTCCTTCCCTTTCCTTTCCTTTCCTTTCCTTT
TCCTTCCCTTCCCTTTCCTTTCCCTTCCCTTCCTTTTCCTATTTTTACTA
CACATCTTCCCTCCTTCCCCCTTTACTTTCTCACATTTTTTTTTCCCCTT
TATCCTTTCCTTTTCCAATTTCTTCCCCCATTATTN
CGATTGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAACTTTAAATTTCTAACAATTTCG
ATTCTTGAAGTTTCTGAGTAATTTGTTAAATGCCTATTCAACACAGAGAG
ATATTTATTTTCAGCGTTGGCTTGTAAATGCCTACAAACTGATTCATGTT
GGTGGTCATTACGACACTTCTGTGAATTGGTTGAATAAATATGATTTTAG
AATTTCACAGTAACGATGACTTCTGAGAGTTTTTGTTGCTCGGACATGTG
GTGGGATGAGAGGCTGCACATTGCTTTGTCTGGGTCAGCGTCTCTGGCGC
TCTATCCTAGATCCACATGGGTGAAAGAGGCATAGTGGATGTGACAGTGC
TCACACAAGAAGTTGACCCTTAGGAGGCTTCCTTCAGGACACATGAGACT
GGGAGTATTGCCCTTGGAGACAGCTAGAAAGATGATCAGAATGAAATGGG
GGCCTTTATTGAGTGCCTACAAGTTGCTGGAGATGTGAACCGTAAGATAG
GTTACTCCTCCTGGTAACCATGAGACCCACCCAGAGGAATCAGAATGCTT
CCTGGGAACAGTGACTATGAACACGGCCTGTCCCCTCTTTTGATCTGGCT
CCCCACCCCCCATGTGACCTGCCTTTATACACAGGGGCCCTAAAAGTTAC
CTTGGCATGGAACCCCCCAAATTTGGCTCCCTCTCCCCTTCCAAAGCCTG
GGGAGGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_h14.g1 MSMg01no367_h14.g1 CHROMAT_FILE:
MSMg01no367_h14.g1 PHD_FILE: MSMg01no367_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:39 2005
         (497 letters)



>mm_chr9_97344306_97345202
          Length = 897

 Score =  917 bits (474), Expect = 0.0
 Identities = 492/498 (98%), Gaps = 2/498 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaactttaaatttctaacaatttcgattcttgaagtttctgagtaatttgttaaatgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 caaactttaaatttctaacaatttcgattcttgaagtttctgagtaatttgttaaatgcc 638

                                                                       
Query: 61  tattcaacacagagagatatttattttcagcgttggcttgtaaatgcctacaaactgatt 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tattcaacacagacagatatttattttcagcgttggcttgtaaatgcctacaaactgatt 578

                                                                       
Query: 121 catgttggtggtcattacgacacttctgtgaattggttgaataaatatgattttagaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 catgttggtggtcattacgacacttctgtgaattggttgaataaatatgattttagaatt 518

                                                                       
Query: 181 tcacagtaacgatgacttctgagagtttttgttgctcggacatgtggtgggatgagaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tcacagtaacgatgacttctgagagtttttgttgctcggacatgtggtgggatgagaggc 458

                                                                       
Query: 241 tgcacattgctttgtctgggtcagcgtctctggcgctctatcctagatccacatgggtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tgcacattgctttgtctgggtcagcgtctctggcgctctatcctagatccacatgggtga 398

                                                                       
Query: 301 aagaggcatagtggatgtgacag-tgctcacacaagaagttgacccttaggaggcttcct 359
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 397 aagaggcatagtggatgtgacagttg-tcacacaagaagttgacccttaggaggcttcct 339

                                                                       
Query: 360 tcaggacacatgagactgggagtattgcccttggagacagctagaaagatgatcagaatg 419
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tcaggacacacgagactgggagtattgcccttggagacagctagaaagatgatcagaatg 279

                                                                       
Query: 420 aaatgggggcctttattgagtgcctacaagttgctggagatgtgaaccgtaagataggtt 479
           ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 278 aaatgggggcctttattgagtgcctacaagttgctggagctgtgaaccctaagataggtt 219

                             
Query: 480 actcctcctggtaaccat 497
           ||||||||||||||||||
Sbjct: 218 actcctcctggtaaccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)