Query= MSMg01no367_n05.b1 MSMg01no367_n05.b1 CHROMAT_FILE:
MSMg01no367_n05.b1 PHD_FILE: MSMg01no367_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:06 2005
(527 letters)
>mm_chr9_64735023_64735949
Length = 927
Score = 955 bits (494), Expect = 0.0
Identities = 519/528 (98%), Gaps = 5/528 (0%)
Strand = Plus / Minus
Query: 5 gaattccaggaatgtcagagatactcagagaaactctgtctgaaaa-a-ac-catacaca 61
|||||||||||| ||||||||||||||||||||||||||||||||| | || || |||||
Sbjct: 814 gaattccaggaaagtcagagatactcagagaaactctgtctgaaaacacacacacacaca 755
Query: 62 cacacacacacacacacacacacac--cattacataacatttttcatatatagaaacagc 119
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 754 cacacacacacacacacacacacacatcattacataacatttttcatatatagaaacagc 695
Query: 120 agcacaggtgtggcctctaagcacactgggctagattcacattgtcttggttagcttatc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 agcacaggtgtggcctctaagcacactgggctagattcacattgtcttggttagcttatc 635
Query: 180 aggttagctagtgggtttaggacctcacttttagaagaaagaaaaagagtgagattcgat 239
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 634 aggttagctagtgggtttaggacttcacttttagaagaaagaaaaagagtgagattcgat 575
Query: 240 gaattacagatatgaaatagtactagaatctttaaagtattattgaagaataagaacaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gaattacagatatgaaatagtactagaatctttaaagtattattgaagaataagaacaat 515
Query: 300 gtaaaataaaagaggaaatacagccttagataaaagtacatgtagagagcactgaaaaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gtaaaataaaagaggaaatacagccttagataaaagtacatgtagagagcactgaaaaca 455
Query: 360 aataacatccatgccccacggctctcatctgaccaaggcaggatgacacacgttaaaatc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 454 aataacatccatgccccacggctctcatctgaccaaggcaggatgacacacgttaaagtc 395
Query: 420 tatacagcaatccctcagcagtctcttacaaaatttctaaattaacaaagtcgatgtcaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tatacagcaatccctcagcagtctcttacaaaatttctaaattaacaaagtcgatgtcaa 335
Query: 480 taagtctcaactttcatgtcttaaaaatttataaaacatgagtagttt 527
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 taagtctcaactttcatgtcttaaaaatttataaaacatgagtagttt 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 10
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_n05.g1 MSMg01no367_n05.g1 CHROMAT_FILE:
MSMg01no367_n05.g1 PHD_FILE: MSMg01no367_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:06 2005
(574 letters)
>mm_chr9_64588487_64589460
Length = 974
Score = 1040 bits (538), Expect = 0.0
Identities = 568/582 (97%), Gaps = 8/582 (1%)
Strand = Plus / Plus
Query: 1 ctgggcaggacaacactgtttgtcaacagaaacttgcatgaccaactacactgagagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ctgggcaggacaacactgtttgtcaacagaaacttgcatgaccaactacactgagagcta 252
Query: 61 cacgttacctcccatcctaaagagtcccctgctcgtgggcatcttaggtctataaacagg 120
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 253 cacgttacctcccatcctagagagtcccctgctcgtgggcatctttggtctataaacagg 312
Query: 121 caccgctgaagaaatgtgtattaactgtgaaagcattatggggctagagaaatggctcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caccgctgaagaaatgtgtattaactgtgaaagcattatggggctagagaaatggctcac 372
Query: 181 atgatgggagttccattcccagcacacaggtcgaatggctgacatcctactgcaactctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atgatgggagttccattcccagcacacaggtcgaatggctgacatcctactgcaactctg 432
Query: 241 gctccaggggatctgtcactctctgctggcctgcatgggcatgtcatacaaatgtacatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gctccaggggatctgtcactctctgctggcctgcatgggcatgtcatacaaatgtacatg 492
Query: 301 ttcatgcacataatattaaaatataaagtaaaccatatatgtggcatatga--tatatat 358
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 493 ttcatgcacataatattaaaatataaagtaaaccatatatgtggcatatgacatatatat 552
Query: 359 atata------tatatacatgtatacatatatatgtacacatatgtatataagaaaccac 412
||||| |||||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct: 553 atatacatatatatatatatatatatatatatatgtacacatatgtatataagaaaccac 612
Query: 413 aaaatatataatacatatatattaacaagacagttaccagactcaccaggtcacaaaaaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aaaatatataatacatatatattaacaagacagttaccagactcaccaggtcacaaaaaa 672
Query: 473 atattcccatggattagttagcagcttttcaataatctggagaagtgcagaatagatcct 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atattcccatggattagttagcagcttttcaataatctggagaagtgcagaatagatcct 732
Query: 533 tggacagaggagagagataagaagggaactcaggtcccgtgg 574
||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 733 tggacagaggagagaaataagaagggaactcaggtcccgtgg 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
