Query= MSMg01no368_b18.b1 MSMg01no368_b18.b1 CHROMAT_FILE:
MSMg01no368_b18.b1 PHD_FILE: MSMg01no368_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:27 2005
(567 letters)
>mm_chr9_29262802_29263764
Length = 963
Score = 963 bits (498), Expect = 0.0
Identities = 545/564 (96%), Gaps = 8/564 (1%)
Strand = Plus / Plus
Query: 5 gaattcccagattctctcagattgtactttaattgaaagcttctctgcccgtgaacatgt 64
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattcccagattctttcagattgtactttaattgaaagcttctctgccattgaacatgt 264
Query: 65 cgagaaaacaaactgtattttgtgggttataaaaataaaaatagtatataaagttggaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgagaaaacaaactgtattttgtgggttataaaaataaaaatagtatataaagttggaat 324
Query: 125 aaggtgaagtagaggtgagtatggaaggaatttgagggacaat-gggggggggatacatg 183
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 325 aaggtgaagtagaggtgagtatggaaggaatttgagggacaatgggggggggggcacatg 384
Query: 184 aaggcatcaagctcacaaagggttaattaaaccattctactgaaaaagaacctcaaggtt 243
||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggcatcaagctcaca------taattaaaccattctactgaaaaagaacctcaaggtt 438
Query: 244 acttcaagtttctttgtgtcattttgttcaccttataaaattggtatctgacctgtagag 303
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 439 acttcaagtttctttgtgtcattttgttcaccttataaaattggtatctgaactgtagag 498
Query: 304 ttgt-gtatgggttaaatcatgtggtttctgaacagcaaatagtcctcattgaagcctgc 362
|||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 499 ttgtggtatggattaaatcatgtggtttctgaacagcaaatagtcctcatggaagcctgc 558
Query: 363 cccaaagcaagaatgggggccctagcatggaagagagagagaggcctgtcaatcatcaca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cccaaagcaagaatgggggccctagcatggaagagagagagaggcctgtcaatcatcaca 618
Query: 423 gaagagtcactacttagagctggttgctccctcccaccccagtgggaattctaaggtctg 482
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 619 gaagagtcactacttagagctggttgcttcctcccaccccagtgggaattctaaggtctg 678
Query: 483 attttgacgagaaatgacagggacaagatagtaagtatgagacagcagcatctgccttgg 542
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 679 attttgatgagaaatgacagggacaagacagtaagtatgagacagcagcatctgccttgg 738
Query: 543 gatctacaattaaattatctctca 566
||||||||||||||||||||||||
Sbjct: 739 gatctacaattaaattatctctca 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 963
Length adjustment: 10
Effective length of query: 557
Effective length of database: 953
Effective search space: 530821
Effective search space used: 530821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_b18.g1 MSMg01no368_b18.g1 CHROMAT_FILE:
MSMg01no368_b18.g1 PHD_FILE: MSMg01no368_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:27 2005
(545 letters)
>mm_chr9_29459125_29460069
Length = 945
Score = 1015 bits (525), Expect = 0.0
Identities = 540/545 (99%)
Strand = Plus / Minus
Query: 1 tttgtcccctttgtacacatacaagaacccaaccccacttgggtacaacctcaaggctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttgtcccctttgtacacatacaagaacccaaccccacttgggtacaacctcaaggctgg 686
Query: 61 cctggagctgcgaatgaaaatggggtcaatttttaaaaagaactcctttgatgttttcaa 120
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 685 cctggagctgtgaatgaaaatggggtcaattttaaaaaagaactcctttgatgttttcaa 626
Query: 121 aggtatggaatcatttctatcctctttggagaaccacttagctgtgtgttggaggttggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggtatggaatcatttctatcctctttggagaaccacttagctgtgtgttggaggttggg 566
Query: 181 gaaggttccaagtgccagagaagctaattagagacaattacagcccaggtacacctgccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaggttccaagtgccagagaagctaattagagacaattacagcccaggtacacctgccc 506
Query: 241 cggtaggacggtaggatgcagaaaccagcaggctgagtggtggttgggtcagagggtgtc 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgtaggacggtaggatgcagaaaccagcaggctgagtggtggttgggtcagagggtgtc 446
Query: 301 ggaggtggagccagggccagaaggcattttatagctcgagaggacaaccagatgcttggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaggtggagccagggccagaaggcattttatagctcgagaggacaaccagatgcttggc 386
Query: 361 cagtacggactcggcctgaggagggtgtgttccttctgtgggcatctattgggacaggca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtacggactcggcctgaggagggtgtgttccttctgtgggcatctattgggacaggca 326
Query: 421 ttacctctggcattgctttaaacaataattttcttaggtcaaaatttcaagaggagtgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttacctctggcattgctttaaacaataattttcttaggtcaaaatttcaagaggagtgaa 266
Query: 481 aattgtaactgggtgaaacatgaccccatgtgaataagggcatgcctgtggtcagatgct 540
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 265 aattgtaactgggtgaaacatgacgccatgtgaataagggtatgcctgtggtcagatgct 206
Query: 541 aatct 545
|||||
Sbjct: 205 aatct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
