Query= MSMg01no368_h18.b1 MSMg01no368_h18.b1 CHROMAT_FILE:
MSMg01no368_h18.b1 PHD_FILE: MSMg01no368_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:56 2005
(557 letters)
>mm_chr9_117608125_117609082
Length = 958
Score = 1025 bits (530), Expect = 0.0
Identities = 548/554 (98%), Gaps = 1/554 (0%)
Strand = Plus / Plus
Query: 5 gaattcatttccgtacc-caaacagactgaaccagttctcagaaataaagactaactcct 63
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttccataccacaaacagactgaaccagttctcagaaataaagactaactcct 264
Query: 64 aaaccctctttgtagcctgtacattccagtatgatctaatatcttcaatgtcatctgata 123
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 aaaccctctttgtagcctgtgcattccagtatgacctaatatcttcaatgtcatctgata 324
Query: 124 tggagttgacttaaggcttcaatctgtccctacctctagtctccctagtctgcatgcttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggagttgacttaaggcttcaatctgtccctacctctagtctccctagtctgcatgcttt 384
Query: 184 ccctagtttagaacacatcccctagacttctggctggcagagcttttatgtctcttttta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccctagtttagaacacatcccctagacttctggctggcagagcttttatgtctcttttta 444
Query: 244 aataaggaaaacttccctaactagaatgtcttcagcaagtacctttctttaacattattt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aataaggaaaacttccctaactagaatgtcttcagcaagtacctttctttaacattattt 504
Query: 304 tgatttctgatcaacacaaaccccaacttcactgactgatttttttcttggttcctcctc 363
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 tgatttctgatcaacacaaaccccaacttcaatgactgatttttttcttggttcctcctc 564
Query: 364 tacagtgtaagttccttggcagtctacacctggtatggcctccaagagtgggcctcaaac 423
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 tacagtgtaagttccttggcagtctacacctagtatggcctccaagagtgggcctcaaac 624
Query: 424 atacgatggacaataaatatcatccttttgggtggtggtgcctgtctaattctttccctg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atacgatggacaataaatatcatccttttgggtggtggtgcctgtctaattctttccctg 684
Query: 484 tgtagatgtctaacatgaaacctgagattaagaccccaaaataatgttctatacaattag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtagatgtctaacatgaaacctgagattaagaccccaaaataatgttctatacaattag 744
Query: 544 aaccgccagaatta 557
||||||||||||||
Sbjct: 745 aaccgccagaatta 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space: 518556
Effective search space used: 518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_h18.g1 MSMg01no368_h18.g1 CHROMAT_FILE:
MSMg01no368_h18.g1 PHD_FILE: MSMg01no368_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:56 2005
(506 letters)
>mm_chr9_117792812_117793717
Length = 906
Score = 890 bits (460), Expect = 0.0
Identities = 487/506 (96%), Gaps = 16/506 (3%)
Strand = Plus / Minus
Query: 1 ctgaatttagtccaaggcatgaagaattgaatcaagctgcagagagagagagagagagag 60
||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 655 ctgaatttagtccaaagcatgaagaattgaatcaagctgc----------------agag 612
Query: 61 agagagagagagagagagagagagagagagagagagagagagagagagaaactaacaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 agagagagagagagagagagagagagagagagagagagagagagagagaaactaacaact 552
Query: 121 tcacacattagagctagaagaaccctaagtctggaagcccttaaaacaattcaggcttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tcacacattagagctagaagaaccctaagtctggaagcccttaaaacaattcaggcttct 492
Query: 181 ggtgttttatcatggtccctcttgacacctgccccatgtctacccatcattctttcttcc 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ggtgttttatcagggtccctcttgacacctgccccatgtctacccatcattctttcttcc 432
Query: 241 aatgtcggctgggaacaagaagcagccatctcaggaagcctgcttacagtctcttagtct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aatgtcggctgggaacaagaagcagccatctcaggaagcctgcttacagtctcttagtct 372
Query: 301 acccatatccctccagctgtagctcagcaacactgtttcttcctttagagacagggtcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 acccatatccctccagctgtagctcagcaacactgtttcttcctttagagacagggtcta 312
Query: 361 ttctggctcactttactctgatttgacacaagtcagagtcatttgggaagaggaaacttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttctggctcactttactctgatttgacacaagtcagagtcatttgggaagaggaaacttc 252
Query: 421 aattgaaaaaatgtcctcaccagattgtctgtggagaaacatgtgctcttccttccttcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aattgaaaaaatgtcctcaccagattgtctgtggagaaacatgtgctcttccttccttcc 192
Query: 481 ttccttcctttcttccttccttcctt 506
|||||||||| |||||||||||||||
Sbjct: 191 ttccttccttccttccttccttcctt 166
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 102
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
