BAC Information

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BAC

Clone NameMSMg01-369I21
Chromosome9 (Build37)
Map Location 92,024,721 - 92,025,311
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621576, Zic1, Zic4
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369I21.T7 (MSMg01no369_i21.b1)MSMg01-369I21.TJ (MSMg01no369_i21.g1)
ACCAG476512AG476513
length7391,409
length of high quality
(start - end)		591 (40 - 630)---
definitionCHROMAT_FILE: MSMg01no369_i21.b1 PHD_FILE: MSMg01no369_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:18 2005CHROMAT_FILE: MSMg01no369_i21.g1 PHD_FILE: MSMg01no369_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TAGAACACATTAAATATTAATGAGTATACACTATCTTATTAGCATATTAT
AATTGAACCAGAAGAGTGTTTCATTAACATTTTCGTTCATGTGATCTACT
TGACTATTTTTGGAAAAAAAATCAGTTTCAATTAAACTGATACATGAGCT
ATCATTCTAGCATTTATTCTTTAAGCCTTTCTCTGAGCTAACTATATCCC
AGCTACGAAAAAAATGAGTGGAGAATCTTGGGATTAGGCAGACATTTTTG
AAAAAAAATACATTTTCGAGGGGATTTTCTGAAATCTTCGTTGGAGATGA
GATATATTTTCCATACGCATGCATATCTGTGCAGCCATTAATATATTAAT
AGAAAAGTCTGGTAACACACAGCCATAGTCTGTCCTGTTACTCCCCACCC
CCTGCATCCCCAAATTGATGACTGTAGGAATATTTAATTTTTTTCCAAAT
CTAGAATACTACAGTATTGTTATGGATGAAAGTTTTTCTAAGCATGGAGA
ACAAGTGTTTCCCAGGTCATATTTGTAAAGCAGAATTCCTCCCTGCAGAA
CCTCCTTGGAATCTTGTTACTCCATTTCTGCTTTGTCCTAGCATTTATAC
CCTCAGATCTTGTGATGCACATGTATATAAACTGATAANCTAAAAGCAAA
TACTTTCACTACTTGAGCTGTGCTAAGGAGCACAGAAAG

CAACATCGCATATACAGGANNNGNGNAAGAAAANNNCNNNAGNGATACCA
CACAAAAGGGCGGAAGGAGGGACGACCNNCNNNNAGTATTCTAACTCCAA
CACACAAAAGAGGGGCCGCCGGNNCCCNCCCCACACACACANANAAAAAA
CACAAANAGATAGAAANTGTAATACATATACCTATTCTACTCGACACCAC
ATCTACAACTTTACACCCACAATTTATTACTAATACACAATACGATATAT
ACACTCACTCGTATCACTCCACATCGCCGCAGGGAGGGAGAGGCGCGCCA
ACAACTGATCTAATATGAAATAACCTTCGAGATACACTCGTCAATTACTT
CATATNTATCGCTCTCTCACACCAGTCAATCGCGCACACCCACTAGCCGC
CTACCCTCTCTGTCAACATTCCTATTAGTTTATTATCTCTCAATATCACA
ACACAACNCACCACACTTTACGTGCTCCGCTTCTGCATCGCACCTGCACA
CACAATAATCACTTATATTCACACATATTACTCATACACAACAACGACAC
ACATACTCTCTATNCTACTATCTANTCATATAACAGATACACATTACTAA
CTACACCTATTGATACACCAGACCAACCACAGACATAATATATCTAACCG
AGATATATATCTCAAATCAGCATAATGANTACGTACTGTGTTGACATGAT
ATACATCCCATTATCTCGTGTAGTACGTTATATTTACATATTTATGATTA
CAAACAGGATATATAACTTAGTTACGCTGAGCACTCAATATAAGTCTAGC
TATATAGCACGATATACATATACACCGTACGCGTCGCGATCTGATATACA
TTTAACACACATCACTCACTACAAGTACAATAGCCATGACTCGACGACTC
GGACAGACACAAGTCACTATATCCACAATACTATCACAATACACACAACC
ATATAACTCCCTATATCATTCATCCTCTCGTACTAAACTCTCACTGCCAA
CTATACACATCGCNTTCTCCATGACCCATATTGCGCTAACGCTGCACATA
CTCTATTCTCACTCGCACACACATCTAATACATCGACTCATCATATGACT
CTCACCTCTCTCTATTGAATCACGAAACGACACATCACATTTNATATACA
ACACCTCCTCAGAGCTAGCACACCTCTATATCTCTACTCAACGCCATCTA
TATATACTCACGTCCATCAACATAACACACACCACACGACAATATATAAA
TAACAGCCACACACGCCCACAACATATACAACGTGCCACGATCTGCGCCC
GCATGCACCAATANATATACACGACCACTATACCGACGATACATCACACA
CGTTATCACTGCATCTCACTGACACCAGTATATACTATATATATACCCAN
CNTCTCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_i21.b1 MSMg01no369_i21.b1 CHROMAT_FILE:
MSMg01no369_i21.b1 PHD_FILE: MSMg01no369_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:18 2005
         (591 letters)



>mm_chr9_92024517_92025511
          Length = 995

 Score = 1096 bits (567), Expect = 0.0
 Identities = 584/591 (98%), Gaps = 4/591 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttagaacacattaaatattaatgagtatacactatcttattagcatattataat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagaacacattaaatattaatgagtatacactatcttattagcatattataat 264

                                                                       
Query: 65  tgaaccagaagagtgtttcattaacattttcgttcatgtgatctacttgactatttttgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaaccagaagagtgtttcattaacattttcgttcatgtgatctacttgactatttttgg 324

                                                                       
Query: 125 --aaaaaaaatcagtttcaattaaactgatacatgagctatcattctagcatttattctt 182
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaaaaaaatcagtttcaattaaactgatacatgagctatcattctagcatttattctt 384

                                                                       
Query: 183 taagcctttctctgagctaactatatcccagctacgaaaaaaatgagtggagaatcttgg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taagcctttctctgagctaactatatcccagctacgaaaaaaatgagtggagaatcttgg 444

                                                                       
Query: 243 gattaggcagaca--tttttgaaaaaaaatacattttcgaggggattttctgaaatcttc 300
           |||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gattaggcagacattttttttaaaaaaaatacattttcgaggggattttctgaaatcttc 504

                                                                       
Query: 301 gttggagatgagatatattttccatacgcatgcatatctgtgcagccattaatatattaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttggagatgagatatattttccatacgcatgcatatctgtgcagccattaatatattaa 564

                                                                       
Query: 361 tagaaaagtctggtaacacacagccatagtctgtcctgttactccccaccccctgcatcc 420
           ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 565 tagaaaagtctggtaacacacggccatagtctgtcctgttactccctaccccctgcatcc 624

                                                                       
Query: 421 ccaaattgatgactgtaggaatatttaatttttttccaaatctagaatactacagtattg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccaaattgatgactgtaggaatatttaatttttttccaaatctagaatactacagtattg 684

                                                                       
Query: 481 ttatggatgaaagtttttctaagcatggagaacaagtgtttcccaggtcatatttgtaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttatggatgaaagtttttctaagcatggagaacaagtgtttcccaggtcatatttgtaaa 744

                                                              
Query: 541 gcagaattcctccctgcagaacctccttggaatcttgttactccatttctg 591
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcagaattcctccctgcagaacctccttggaatcttgttactccatttctg 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 995
Length adjustment: 10
Effective length of query: 581
Effective length of database: 985
Effective search space:   572285
Effective search space used:   572285
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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