BAC Information

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BAC

Clone NameMSMg01-369O13
Chromosome9 (Build37)
Map Location 35,864,789 - 35,865,035
singlet/doubletsinglet
Overlap genenone
Upstream geneSt3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394, Cdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik
Downstream geneEG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369O13.T7 (MSMg01no369_o13.b1)MSMg01-369O13.TJ (MSMg01no369_o13.g1)
ACCAG476781AG476782
length889743
length of high quality
(start - end)
---242 (204 - 445)
definitionCHROMAT_FILE: MSMg01no369_o13.b1 PHD_FILE: MSMg01no369_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:46 2005CHROMAT_FILE: MSMg01no369_o13.g1 PHD_FILE: MSMg01no369_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTTGCGGTCGCTTATACTACTCTCTATCTCGGAGAGGATCCGTCGGA
ATTCCCTGGAATAAAACCTAGATTGGTCAGGGTGGGATGATCTTCTTTAA
TGTCGTTCTTTCTTCTCAGTTAGCTGTGAATTTTTATTTGAGTATTTTTT
GCATCGCGTATTCATATATGTATAATGTTTTCTGAAGTTCTCTTATCTTT
GTTGGGCTCTTTTCTGTGGTTTAGTGTAACTGATTTATTGGTCGGTTTCT
TACGAATGAGTTGTTTTATAGTACCCCTCCATTTCTATTTTTGTGGAACA
GTTTTGTGCAGAAACTGTATCTTATCTCCTTCCTTTTGCATGTCTTGGTA
TATATTTTGTTCTTACATTTTTTCTTGTCTTCTGTCCACCTCTTTTTTTT
TTTCATTTTTTTTCCCTACTTTTCTATGACTGCTTCCCTATTTTTTCTAT
TTGCATATGCTTACCGTTCTCCCACTTCCTTATCCTTCATTTCTTTCTTT
TTCTTTTCGTCCGTCTGCTCTTTTTTGTCCGACTTATACTTGTACTCTTT
TTCTTTCTTTCTTTTTACTTCTTTCCCTCCTCTCCCCTCATTATTCATTA
CGTTCTCTTTCCTCCTACTTGTCTTTTTGCCTTTCCTTTTTTCTTCTCTT
CTCTTCTCTCTTTTTATTTTCCCTCCGCTTCTTTACTTTCTTTTCTTACT
TCTTCTTTTCTTTCGTTTTTTTTTTTTACGTGCTTTGCTCTTTTTCGTCC
CTTTACCCATTTTATTTCCTCCCTATGTACCCCCTCCTTCTCTTTTTTTT
TCCACCCTCTTTTATTTCTTTTTCCCACCTTTTTTCCCCTCCCTTTATAT
TTCGCTTTTATTTTATTTATATCTTTTTCTTTTTCCTTN
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTAGTTGAACATACTATGCCAGGGTTGAT
ATAGAGATGACCTATGAAAAGAGGTGGCTCAGAATCCTTACCTAAAGCCA
AGTACATACCCCATACTTTTCTCAACTAGCAXXXXXXXXXXXXXXXXXXX
XXXGGATCAGAGTTTTCCTTTGCCTTCATATTTTGGTGAATGTTAATTGA
CTTCTATTTCTCACGTGTAAAACAGATGTGAAACTCCATGGCTTCTAAAC
TTACATATAAGATTTATTACTATGACGGGCATGGTGGTGCACACTTTTAA
TCCTAGCACTTGGGGCTGACCGCCTGAGCACCAGCCCTCTGGCCTGCAAA
AAAAAAAAAAAAAACTTCACAAATACTCTAAAACAGAGCTCATAGCATTA
ACTGCTGTGGCAAGTACTGCAGCCTGACAGAGCCATTCAAAGAGGAGAGC
TAAAGGGGTAGGCTACTGAGCTGGGGAAAGCCAGCTGTTGTATTTGAATC
CTGATAGAGATAATGCGGTAGGTTAAGGAAGCTTTCCAGGATCACTTCGG
AGAGTATTGAAAAATGATAAAGCCTTGTTTTTGTTTTCCTGTCTCTTTGA
CAATTTTGTGAGACTCTCCCTGTTATCCTCCTGTGCCAAATGGTTTCTAA
TTTTTGGTCCAGTTTTCCCTTGGACGCTTTGTTTTTCCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_o13.g1 MSMg01no369_o13.g1 CHROMAT_FILE:
MSMg01no369_o13.g1 PHD_FILE: MSMg01no369_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:46 2005
         (242 letters)



>mm_chr9_35864714_35865355
          Length = 642

 Score =  389 bits (201), Expect = e-113
 Identities = 232/247 (93%), Gaps = 8/247 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatcagagttttcctttgccttcatattttggtgaatgttaattgacttctatttctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggatcagagttttcctttgccttcatattttggtgaatgttaattgacttctatttctca 263

                                                                       
Query: 61  cgtgtaaaacagatgtgaaactccatggcttctaaacttacatataagatttattactat 120
            ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 262 tgtgtaaaacagatgtgaaactccatggcttctaaacttacatataagaaaaattactat 203

                                                                       
Query: 121 gacgggcatggtggtgcacacttttaatcctagcacttggggctgaccgcctgagcacca 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 202 gacgggcatggtggtgcacacttttaatcctagcacttggggctgaccacctgagcacca 143

                                                                       
Query: 181 gccctctggcctgcaaaaaaaaaaaaaaaa--------acttcacaaatactctaaaaca 232
           ||||||||||||| ||||||||||||||||        ||||||||||| ||||||||||
Sbjct: 142 gccctctggcctgtaaaaaaaaaaaaaaaaaaaaaaagacttcacaaatcctctaaaaca 83

                  
Query: 233 gagctca 239
           |||||||
Sbjct: 82  gagctca 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)