BAC Information

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BAC

Clone NameMSMg01-370D06
Chromosome9 (Build37)
Map Location 24,638,700 - 24,639,035
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4, Tbx20, LOC666251
Downstream geneLOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370D06.T7 (MSMg01no370_d06.b1)MSMg01-370D06.TJ (MSMg01no370_d06.g1)
ACCAG477006AG477007
length773788
length of high quality
(start - end)
324 (42 - 365)336 (73 - 408)
definitionCHROMAT_FILE: MSMg01no370_d06.b1 PHD_FILE: MSMg01no370_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:10 2005CHROMAT_FILE: MSMg01no370_d06.g1 PHD_FILE: MSMg01no370_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCACATAAAACCAGATACACTGAAACTTATAGAGGAGAAAGTGGGAAAAA
GCCTCGAAGATATGGGCACAGAGGAAAAATTCCTGAGCAGAACAGCAATG
GCTTGTGCTGTAAGATCAAGAATCGACAAATGGATATTAGTCCCCTATCA
GATTTAGGATTGATAAAAATCCTTTCCCAATCTCTTGGTGGCCTTTTTGT
CTTATTGACAGTGTCTTTTGCCTTACTGAAGCTTTGCAATTTTATGATGT
CCCATTCGTCAATTCTTGATCTTACAGCACAAGCCATTGATGTTCTGTTT
AGGAATTTTTCCCATGTAACTATATCAGGCCCTCAATGTTCACACTATTG
AAAGCACTCAAGCACCTGATATTGTCTGTTTCCCCTTATTCGTTACATCT
ACATGATCCATCTTCCCTCCTCCTTAGATCCTGCCTTTAACCGTATTTTT
AGCCATATTATGGTCTTAGCTCTCTCTCATTGTTTTCCTTTCTCTCCCTT
TTTTTTTCTCTCTCTTCTTCTGTTTTTTTTCTCCCCATTTTCCTTCTCCC
TTTCTCCTTTCCCCTTTTTTCTTATGTCTTTTTTCACTTGTCTCACCTTT
TTTTCCTCTTTTTCTCCCTTACTTTTTTCCTTTCCTCTCCCTCTCCTTTT
TTCCCTCTCTTACTTTTCCTCCTGTATCTGTTTCTATATTATTCCACCTT
TTTGTCCTTCCTTCCTCCCCTCC
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTAATAATCTTATTTTTGCCTGTAATTG
TCACAGGCAGAGGGAGCAACACTGGGAAGCCATGTCTGGCGTCTATCCCT
AGTTCTTCATCCAGACCTGCATAACATTAGACAAAACAATGGCATCCCTC
CTGCCAGTCTCTTTATGTCTTTCTTGATTGTTGAAGCTGTGGGGAAGACT
GGAAGTGACTTCATAATGAAATTGTTTTATCAATTACTTTTTAATGTAGT
GAACTGTAAAGAACAGGTAGACTGGAGGTACATGGCTCCGATCTGGACTG
TACAGAGCAGACTGGAGCCAGTTCTCTCTGAATATCCTGTCTGTGAGGAG
ACACAGAGCAAGGAACAGATCATAGTCTCCGGAGGACGAAGTGTTCACCT
ACTGGATATCTCCCTGTTTACCATTCTTTATGAACCTTTTTTGATCTTGC
TCCTTAATTCGTTGGGGTACTTATTTTATCTCCGGTTTAACATTGTTCTA
TTTTATCAGCTCAAATTTCCCTCTCTTTTTCCCCCCCCTTTTCTCTTCTC
TCCCGTGTTTCTGATCTTCCCTCTTTCCTTTTTTTTTCCCTCTCCCCCAT
CTTCACCATCTCTTTTTCTCTTTCCTCTATTCTCACCTTCCCATTTTTCT
TTTCCTTTTTAATCCCACCTTTCTTCCCCATTCTCCTTCTCATATTACTT
TCTCCATACTCTATTTCTTTATCTTTCCTTCCTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_d06.g1 MSMg01no370_d06.g1 CHROMAT_FILE:
MSMg01no370_d06.g1 PHD_FILE: MSMg01no370_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:10 2005
         (336 letters)



>mm_chr9_24638500_24639235
          Length = 736

 Score =  627 bits (324), Expect = 0.0
 Identities = 333/336 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaataatcttatttttgcctgtaattgtcacaggcagagggagcaacactgggaagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctaataatcttatttttgcctgtaattgtcacaggcagagggagcaacactgggaagcca 477

                                                                       
Query: 61  tgtctggcgtctatccctagttcttcatccagacctgcataacattagacaaaacaatgg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tgtctggcgtccatccctagttcttcatccagacctgcataacattagacaaaacaatgg 417

                                                                       
Query: 121 catccctcctgccagtctctttatgtctttcttgattgttgaagctgtggggaagactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 catccctcctgccagtctctttatgtctttcttgattgttgaagctgtggggaagactgg 357

                                                                       
Query: 181 aagtgacttcataatgaaattgttttatcaattactttttaatgtagtgaactgtaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aagtgacttcataatgaaattgttttatcaattactttttaatgtagtgaactgtaaaga 297

                                                                       
Query: 241 acaggtagactggaggtacatggctccgatctggactgtacagagcagactggagccagt 300
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 acaggcagactagaggtacatggctccgatctggactgtacagagcagactggagccagt 237

                                               
Query: 301 tctctctgaatatcctgtctgtgaggagacacagag 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 tctctctgaatatcctgtctgtgaggagacacagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)