CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAGATTATATTTATAATGTTCCAA
ACAAATATGCAAAGGAAATATGTGAGAGACACCAATAATTATAAAGTAAG
TTATATATAATATATTACATACTTTAAAATATATTATTTTATTTGTTATA
ATTGTATTTACTTATTATAAATATATTAAATAAACATGTTTATTTATTAT
ATACATATAATAAACAGTATATGCACAACCTTTTTTTGCATATGTTGGGC
ATCCTGCTTCCCATCCATAAAACAAAGATTCTATGAACATTTTTCCTTTT
ACTTAAAATAGATTTTTTTCATATAATATATTCTGACTACGTTTTTCCCT
CCCTCGAGTCTTCCCAGTTCCTTCCCTCTTATCCAAGTCTACCCCCTTTC
TGTTCACATATTTAACTGGCAGTGGACTATGATAGAAAGTGAGTTACCAT
TAAGTAGTATTTGAACACTGTGCACTATAAAATGACCTTGGGACTGGCCT
GTCTTCCCACTTTTCTTTGGTAAGGGAAAACATACAGTGGTGTTCCGTCT
GTCAACAAATGCTTCCCAAACACCCCCCTTAGAGTTGTGTGATGTACACG
AAAAACCTTTCCCTCCCTTTCCCTCGGTCCCCCGCGTTAAACATGGATGG
TAGCCCTCCACCAATCGTTTCTGTTTATTTTTTTCTTCTTTCGGTTTTTC
TTGACATCCTTTCCTTTTTGTTTACCCC

NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGAGCCCTCCCCCACTCCCAACCTCAAAGATGCTAGTTGTT
TCAAACTGGGTCACAGCCTACTAGAATTTGAGGTCTTAGAGTCCACTAGG
AGTTGGAGGGATAAGAAGCCTCCCAAACCAGGACTCCCCTACTTCCTCTG
AACCTTTGCTTTCAGTTTCAATAATAGTAGTTCTAATTAAGAGTTTCTGT
TTATATAAAACAAGTGTTCAAATGTTTGGTGGACATCTTGTAGGCTGAGG
CCTAATCCCATGTTCATCTTAACCCCATCAGCAGGACTTCTGAGGAAGGA
AGGAAAGCCCTGGGCCCCACTGACTCAGGTCAGAGGCTCTGGGACAACCA
GCCTTGTCATCTTCACAAATACCTAGGTCTTCACAGTACCTGGGGTGTGT
TCTCTGTCGCTTCTCTCAGAAAGCTCCCCCAAGAGAGAAGCGATTTCTTC
TCCAAATACCCTACAGCAGTTTTCAATCAGAAATTGTATAAGAAGAGAAA
CCTGTGCCAGATGGAGAGAATTCAAGTGTTATTATCCACAGAACCCCCTT
ATGTCGCACTTTATATACACCTCCTTCTTCTTATCCCCAAACGGAAAAAA
AATAGGGGAAAGTTTTCCTACGGGATTCTAAACCCCCCCTGGTTATTGTG
TATAATAATAAACCCCATTCCGGGTGTCAGACGGTTTTTGGGGTATAATG

Query= MSMg01no371_f09.g1 MSMg01no371_f09.g1 CHROMAT_FILE:
MSMg01no371_f09.g1 PHD_FILE: MSMg01no371_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:44 2005
         (497 letters)



>mm_chr9_51655213_51656108
          Length = 896

 Score =  915 bits (473), Expect = 0.0
 Identities = 488/493 (98%), Gaps = 1/493 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagagccctcccccactcccaacctcaaagatgctagttgtttcaaactgggtca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gaattcagagccctcccccactcccaacctcaaagatgctagttgtttcaaactgggtca 637

                                                                       
Query: 65  cagcctactagaatttgaggtcttagagtccactaggagttggagggataagaagcctcc 124
           |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 636 cagcctactagaatttgaagtcttagagtccactaggagttggggggataagaagcctcc 577

                                                                       
Query: 125 caaaccaggactcccctacttcctctgaacctttgctttcagtttcaataatagtagttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 caaaccaggactcccctacttcctctgaacctttgctttcagtttcaataatagtagttc 517

                                                                       
Query: 185 taattaagagtttctgtttatataaaacaagtgttcaaatgtttggtggacatcttgtag 244
           |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 516 taatgaagagtttctgtttatataaaacaagtgttcaaatg-ttggtggacatcttgtag 458

                                                                       
Query: 245 gctgaggcctaatcccatgttcatcttaaccccatcagcaggacttctgaggaaggaagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gctgaggcctaatcccatgttcatcttaaccccatcagcaggacttctgaggaaggaagg 398

                                                                       
Query: 305 aaagccctgggccccactgactcaggtcagaggctctgggacaaccagccttgtcatctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaagccctgggccccactgactcaggtcagaggctctgggacaaccagccttgtcatctt 338

                                                                       
Query: 365 cacaaatacctaggtcttcacagtacctggggtgtgttctctgtcgcttctctcagaaag 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 337 cacaaatacctaggtcttcacagtacctggggtgtgttctctgtcgcttctctccgaaag 278

                                                                       
Query: 425 ctcccccaagagagaagcgatttcttctccaaataccctacagcagttttcaatcagaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctcccccaagagagaagcgatttcttctccaaataccctacagcagttttcaatcagaaa 218

                        
Query: 485 ttgtataagaaga 497
           |||||||||||||
Sbjct: 217 ttgtataagaaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space:   431482
Effective search space used:   431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)