Query= MSMg01no371_m23.b1 MSMg01no371_m23.b1 CHROMAT_FILE:
MSMg01no371_m23.b1 PHD_FILE: MSMg01no371_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:23 2005
(466 letters)
>mm_chr9_34276648_34277513
Length = 866
Score = 839 bits (434), Expect = 0.0
Identities = 458/466 (98%)
Strand = Plus / Plus
Query: 1 tttctggctatttcaaagagcatgcagagctcaccagtgaaaatgttagaaatcctgcct 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctggctatttcaaagagcacgcagagctcaccagtgaaaatgttagaaatcctgcct 260
Query: 61 gtgctgagcagaactgcgtccacctactggtgggaaacagtaagagaccctaagagggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgctgagcagaactgcgtccacctactggtgggaaacagtaagagaccctaagagggaa 320
Query: 121 cactgcaggggaaggctggcttcaagcagccaagaacacctacttgctccatcttcaact 180
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 321 gactgcaggggaaggctggcttcaagcagccaaggacgcctacttgctccatcttcaact 380
Query: 181 gcaaaagagaagcagacaaggaaagatccttccacaaccagagacagaatgctcctggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaaaagagaagcagacaaggaaagatccttccacaaccagagacagaatgctcctggga 440
Query: 241 agggtttgttccgaatcacctttgaatgtggatgctttagagaaaaattctttccctaaa 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggtttgttctgaatcacctttgaatgtggatgctttagagaaaaattctttccctaaa 500
Query: 301 ggattaaacttaaaacatttgggaagtggggacatcaaggcccctcagaaaagcacagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggattaaacttaaaacatttgggaagtggggacatcaaggcccctcagaaaagcacagat 560
Query: 361 tataaaactaaccaactaaccgaccatatcaacctttcagggtcgttttagttgatgaaa 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 tataaaactaaccaactaaccgaccatatcaacctttcagggtccttttagttgatgaaa 620
Query: 421 atggaaagaaaatgtgtttttatagatgtctggccccaaagcatca 466
||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 atgtaaagaaaatgcgtttttatagatgtctggccccaaagcatca 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_m23.g1 MSMg01no371_m23.g1 CHROMAT_FILE:
MSMg01no371_m23.g1 PHD_FILE: MSMg01no371_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:24 2005
(502 letters)
>mm_chr9_34443504_34444405
Length = 902
Score = 897 bits (464), Expect = 0.0
Identities = 493/510 (96%), Gaps = 15/510 (2%)
Strand = Plus / Minus
Query: 5 gaattctctctgatc----ttccttgtgatttcaaaccccaaatctgtattcagtgggag 60
||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 877 gaattctctctgatcaaaat---ttgtgatttcaaaccccaaatctgtattcagtgggag 821
Query: 61 tgggagtttaggggataaaaataaatatggatagtttcgcacacacacacatacacatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 tgggagtttaggggataaaaataaatatggatagtttcgcacacacacacatacacatgt 761
Query: 121 gcgtgcgtgcgcacacacacacacacacacacacaca-------a-acacacacacacca 172
||||||||| ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 760 gcgtgcgtgtgcacacacacacacacacacacacacacacacacacacacacacacacca 701
Query: 173 cgggcatttctctttaactctaaaattattatcttggagagtggcgaatgagattttttt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 cgggcatttctctttaactctaaaattattatcttggagagtggcgaatgagattttttt 641
Query: 233 tctagctgtgaattttggtgttatcagctgtcaggttggaaaaatgtatattggtaataa 292
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 640 tctagctgtgaattttggtgttatcagctgtcaggttggaaaaatgtatagtggtaataa 581
Query: 293 agggggaaatatatgatccataaataaagaaaaacgggacttgtttggcattataaagtt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agggggaaatatatgatccataaataaagaaaaacgggacttgtttggcattataaagtt 521
Query: 353 ttaatgcctttaggtagcaaggactcaaaacaaatctttttccttaagtctcaccgtctt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ttaatgcctttaggtagcaaggactcaaaacaaatctttttccttaagtctcaccgtctt 461
Query: 413 ccacagttctgctccaaagcctataaatggtgctccctaaacggtgctcccgtgggctag 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ccacagttctgctccaaagcctataaatggtgctccctaaacggtgctcccgtgggctag 401
Query: 473 agagactgtatatcaaaaaaaaaaaaaaaa 502
||||||||||||||||||||||||||||||
Sbjct: 400 agagactgtatatcaaaaaaaaaaaaaaaa 371
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
