BAC Information

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BAC

Clone NameMSMg01-372I03
Chromosome9 (Build37)
Map Location 100,828,978 - 100,829,376
singlet/doubletsinglet
Overlap geneStag1
Upstream geneLOC667456, 4930519F24Rik, LOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, LOC100040990
Downstream genePccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099, Ephb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372I03.T7 (MSMg01no372_i03.b1)MSMg01-372I03.TJ (MSMg01no372_i03.g1)
ACCAG478755AG478756
length720734
length of high quality
(start - end)
403 (46 - 448)398 (67 - 464)
definitionCHROMAT_FILE: MSMg01no372_i03.b1 PHD_FILE: MSMg01no372_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:16 2005CHROMAT_FILE: MSMg01no372_i03.g1 PHD_FILE: MSMg01no372_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATTGTGTACCTGAACCACATTTTCTGTATCCATTCTTTGGTTGA
GGAACATCTGAGTCATTTCCAGCTCTGGCTAATACAAATAAGGCTGCTAC
GAACATAGTGATATACATAGTGATAACATAGTGATAATACATATTGATAG
TGATAATACATATACATAGTGATAACATAGTGATAATACAAACAAGGCTG
CTACGAACATAGTGAAGCACCTGTTCTTGGATATGGTGGAGCATCTTTTG
GGTATATGCCCAGGAGTGATATTGCTGGGTCTTCAGTATTTGATATGGTG
GAGCATCTTTTGGGTATATGCCCAGGAGTGATATTGCTGGGTCTTCAGTA
TTTGATATGGTGGAGCATCTTTTGGGTATATGCCCAGGAGTGATATTGCT
GGGCCTTCAGTATTTGATATGGGGGAGCATCTTTTGGGCATATGCCCAGG
AGTGATATTGCTGGTTCTTCAGTATTTCCAACTTTCCAAGGAACCGCCCA
TGCTGATTTCCAGAGTGGCTGTACCAGTTTGCAGCCCCACCCGCGTTGTA
CGAGTGTCCCTTCCTCCTCTTGTTCCCCTGTCTCTGCCCTTGTTTGCAGT
TTTTTTCTCATCCTTTTTGATTTTTGCCATTTGTAATTTTTTGGTTTTTT
CCCCTTTTTTTTCGCTTACC
AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCGCGAAATTCTGTGCTAAAATAGTGAGGGTCTAGTGAGCT
GACTATAACTTGCATTGACTTCTCATCTTCAGCTCCTAATACCAGAAAGA
GCTTTATTCATATATATATATATATATACACACACACACGTGTGTGTATG
TGTTTGTGTATGCATATATGCACATGTGAGTACTTCAGCCCATACAGCTA
AAATATGTTCATATCACTCCTCCCAAGTAGCTGGTCCCCTGACCACTATA
AAGTACACACGTAGATATTGTGAAGCTATGGGAAAAGGCTACTGGCTTTG
ATATATAAAATATTAAATGACCAGCTCTTTCAGAGCAGTAGACTCTTGAA
TCTGTATACTTGGGTAGCAGTATAGACGTCAACATTCAGGTGAGGAAATC
CTTGTAAGAACAGACTCATCCTAAAGAGGGACCCATTAAAATTGAAGCTT
TTTCCATTATAAAATTTTACAAATTATTTAATTATGCTTCCCTATTAAAG
AATACTTTACCACCAAATGAATCTTTTTATCTAATTTTCTTATTCTTATA
TTGGGCTTACAAAATACCTCTAATTAATGAACATTTATCCTTTAATGTCC
TTTTTTCAACAAATTCTGCCCCCAGTTCCCTTCATAGCATTTAAAGGAAA
CACCACCCCTCCATAATCTTTCAGGAAATTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_i03.g1 MSMg01no372_i03.g1 CHROMAT_FILE:
MSMg01no372_i03.g1 PHD_FILE: MSMg01no372_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:16 2005
         (398 letters)



>mm_chr9_100828780_100829576
          Length = 797

 Score =  739 bits (382), Expect = 0.0
 Identities = 395/402 (98%), Gaps = 7/402 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctgtgctaaaatagtgagggtctagtgagctgactataacttgcattgacttctcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 attctgtgctaaaatagtgagggtctagtgagctgactataacttgcattgacttctcat 258

                                                                       
Query: 61  cttcagctcctaataccagaaagagctttattcatatatatatatatatatacacacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cttcagctcctaataccagaaagagctttattcatatatatatatatatatacacacaca 318

                                                                       
Query: 121 cac----gtgtgtgtatgtgtttgtgtatgcatatatgcacatgtgagtacttcagccca 176
           |||    ||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cacacacgtgtgt--atgtgtttgtgtatgcatatatgcacatgtgagtacttcagccca 376

                                                                       
Query: 177 tacagctaaaatatgttcatatcactcctcccaagtagctggtcccctgaccactataaa 236
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tacagctaaa-tatgttcatatcactcctcccaagtagctggtcccctgaccactataaa 435

                                                                       
Query: 237 gtacacacgtagatattgtgaagctatgggaaaaggctactggctttgatatataaaata 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtacacacgtagatattgtgaagctatgggaaaaggctactggctttgatatataaaata 495

                                                                       
Query: 297 ttaaatgaccagctctttcagagcagtagactcttgaatctgtatacttgggtagcagta 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttaaatgaccagctctttcagagcagtagactcttgaatctgtatacttgggtagcagta 555

                                                     
Query: 357 tagacgtcaacattcaggtgaggaaatccttgtaagaacaga 398
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tagacgtcaacattcaggtgaggaaatccttgtaagaacaga 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 797
Length adjustment: 9
Effective length of query: 389
Effective length of database: 788
Effective search space:   306532
Effective search space used:   306532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)