BAC Information

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BAC

Clone NameMSMg01-373N19
Chromosome9 (Build37)
Map Location 67,083,606 - 67,084,097
singlet/doubletsinglet
Overlap geneTln2
Upstream geneDapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1
Downstream geneLOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373N19.T7 (MSMg01no373_n19.b1)MSMg01-373N19.TJ (MSMg01no373_n19.g1)
ACCAG479792AG479793
length724780
length of high quality
(start - end)		490 (42 - 531)249 (60 - 308)
definitionCHROMAT_FILE: MSMg01no373_n19.b1 PHD_FILE: MSMg01no373_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:54 2005CHROMAT_FILE: MSMg01no373_n19.g1 PHD_FILE: MSMg01no373_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTCAGAGGATCCGCGGAATTCCTAAAGCTTCCATAGCCAAATGGCAC
TGCCAGCTGAAGACCAAATGTTCAGACACACTAACTTATTGTGGATGGGG
GATGCTTTGTTTCAGACCACAACAAACTGTATCAATACTACTACATTATC
TGTTTGTTGTGGAAAGGGATTATAGCTCCTGAAGGCTTAAGATATTTTCT
AAAGTTTAGTTGAATGCAATTAGGAGTCCTTAAGAAAAGTATTCAGTGGG
AAAAGATGGAAGATAACAACCCGTGTCTTTGATATAGGACAAAGGTTAGG
ATTGTAACTGGCAAACACATTGATCTAGATATTTCTTCCTGACAACTCTC
AACACACTCTCACAGATTAAATTTTGTAATTGTTTTCCATGCCAAAAAAA
ATCGGGACATTTATTATCTCTAACTTTCCGCTTCTGGTAACAAATCTAAA
CCCTGGTGACTGTGCTCACTTTACGGATGGTGAGCCCGTAAACCTTAATT
GCAGACCTTAATTTGGATCAGATATGTCTGATGAAGAGAACGTGCTCGGG
ACTGTGCTCTGTCGTTTGAGTTTTCTGTTGTAGGTGAACTTCTGCGCAAA
GTTGGTTATATTTATAAGAACCCGGAGTCCCAAAGTAAAAAAATACCTTA
TTGGCTGCCCCAGGAAATTGGCTATTACCCCAAAAGATTTCTTTCCTGAA
AATACAACCCCTCCGCCGGGTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGGGGTCGGTGAGGAATAAGAAAGGGAGAAGGCCCAAGTCT
TACAAGTCAGTGGTATGTGTGGGGATTCATTGATTCATTGTTGGGTCATT
GATTCATTGTTGGGTCATTGATTCATTGTTGGGTCATTGATTCATTGTTG
GGTCATTGATTCATTGTTGGGTCATTGATTCATTGTTGGGTCATTGATTC
ATTGTTGGGTCATTGATTCATTGTTGGGTCATTGATTCATTGTTGGGTCA
TTGATTTTTTTTTGGGNCATTGATTCATTGTTGGGTCATTGATTCATTGT
TGCCTCTTTGTTGCATTTATGCTGCCTCTATGATGTGAGTACTTATTAAC
CACCCCCCATGCAAATATATTCTCCCCATAATATCAATTAATGTTGGTAG
AGAATCTATCCATCCATTCAATCCTTCCTTCCATCTATCCATTCATCCTT
CCATCCCATCCATGGTTTTCCTTGACCCATATTATTGGCCTTTAAATGGC
TAAATTATTCCATCTTGGCTTTTCTATTCTAAATGGTATCCGCTTAATCG
TCTCTACCTCCTTCTTCGTTCTTCCAACTCCCTATTATATCTTCACTTGC
CCCTATTTAATTTTATTATTTCCCCCTCCCATAATACAAAAATATTTTTC
CCTTCTCTTCTCTAACCAATTTTCTCTTCTTTTATATTATCCTCTTACCA
CATATTGCATAATATTTTCTTATTTATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_n19.b1 MSMg01no373_n19.b1 CHROMAT_FILE:
MSMg01no373_n19.b1 PHD_FILE: MSMg01no373_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:54 2005
         (490 letters)



>mm_chr9_67083406_67084297
          Length = 892

 Score =  917 bits (474), Expect = 0.0
 Identities = 487/492 (98%), Gaps = 2/492 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatggcactgccagctgaagaccaaatgttcagacacactaacttattgtggatggggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 692 aaatggcactgccagctgaagaccaaatgttcagacacactaacttattatggatggggg 633

                                                                       
Query: 61  atgctttgtttcagaccacaacaaactgtatcaatactactacattatctgtttgttgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 atgctttgtttcagaccacaacaaactgtatcaatactactacattatctgtttgttgtg 573

                                                                       
Query: 121 gaaagggattatagctcctgaaggcttaagatattttctaaagtttagttgaatgcaatt 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaaagggagtatagctcctgaaggcttaagatattttctaaagtttagttgaatgcaatt 513

                                                                       
Query: 181 aggagtccttaagaaaagtattcagtgggaaaagatggaagataacaacccgtgtctttg 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 512 aggagtccttaagaaaagtattcagtggaaaaagatggaagataacaacccgtgtctttg 453

                                                                       
Query: 241 atataggacaaaggttaggattgtaactggcaaacacattgatctagatatttcttcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 atataggacaaaggttaggattgtaactggcaaacacattgatctagatatttcttcctg 393

                                                                       
Query: 301 acaactctcaacacactctcacagattaaattttgtaattgttttccatgcc--aaaaaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 392 acaactctcaacacactctcacagattaaattttgtaattgttttccatgccaaaaaaaa 333

                                                                       
Query: 359 aatcgggacatttattatctctaactttccgcttctggtaacaaatctaaaccctggtga 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aatcgggacatttattatctctaactttccgcttctggtaacaaatctaaaccctggtga 273

                                                                       
Query: 419 ctgtgctcactttacggatggtgagcccgtaaaccttaattgcagaccttaatttggatc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ctgtgctcactttacggatggtgagcccgtaaaccttaattgcagaccttaatttggatc 213

                       
Query: 479 agatatgtctga 490
           ||||||||||||
Sbjct: 212 agatatgtctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 892
Length adjustment: 10
Effective length of query: 480
Effective length of database: 882
Effective search space:   423360
Effective search space used:   423360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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