BAC Information

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BAC

Clone NameMSMg01-374K24
Chromosome9 (Build37)
Map Location 81,877,027 - 81,877,416
singlet/doubletsinglet
Overlap gene4930486G11Rik
Upstream geneEG666534, LOC100039038, Htr1b, LOC671392
Downstream geneLOC100039085, Irak1bp1, Phip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374K24.T7 (MSMg01no374_k24.b1)MSMg01-374K24.TJ (MSMg01no374_k24.g1)
ACCAG480423AG480424
length789736
length of high quality
(start - end)
178 (292 - 469)391 (58 - 448)
definitionCHROMAT_FILE: MSMg01no374_k24.b1 PHD_FILE: MSMg01no374_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:00 2005CHROMAT_FILE: MSMg01no374_k24.g1 PHD_FILE: MSMg01no374_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAGAACGGCTAGAAGTGGGGGCGGTATACGACTCACTATTTTCAGAGG
ATCCGCGGAATTCAAGGAGCATACCTAAACATGATAAAAGCAATCTACAG
CAAACCAGTAGCCAACATCAAGGTAGATGGAAAGAAGCTGGAAGCAATCC
CACTAAAAGCAGGGAGTAGACAAGGGTGCCCACTTTCTCCCTACCTTTTC
AACATAGTGCTTGAAGGATTAGCCAGAGCAATTTGACAACAAAAGGAGAT
CAAGGGGATACAAGTTGGAAAGGAGGAGGTCAAAATATCACTTTTTGCAG
ATGATATGATAGTATATAAAAGTGACCCTAAAAATTCCACCAGAGAACTC
CTAAACCTGATAAACAGCTTTGGTGAAGTAGCTGGATATAAAATTAACTC
AAAGAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAGG
AAATTAGGGAAACAACACCCTGCTCNNTAGTCACAAATAATATAAAATAT
CTCGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTT
CAAGTCCCTGAAGAAAGAAATTAAAGAGATCTCCCAAAATGGAAAGATCT
CCCCATGCTCCTGGGATGGGAGGAACAAAATTGGAAAAATGGGTATCTTT
GCCCAAAGGAATCCACGAATTTATGGGGTCCCCCCTCCAAAAATCCCACC
TCCATTCTTCCATGAAATAAAAAAGAAAAAATTTGGCAAATCCCCCCGGG
GAAAAAGAAAAAACCCCTGGTAAGAGAAAAAATTTTCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTAAATTTTGAGGGATACTAACAAAGGCACAGAGTTTCTTAGA
AAAGTAAGCATTCTCTTAAGTCACCAATTGGCCTCACAATTAAATAACTA
TGGTCACATTAGAAAAAATTATCCGTGGATGTTACTTTTATCTCTGTGAC
AGTTTAGATAATAAATGTCGCCTGTAGGCCCCAGTGTTCGGTGGTGGTGT
TTGGGGAGGCTTTGGGAGTGTGCCCTTGCTGGAGGAAGTCTGTCACTGGG
GGCGGGGCTTGGGAATGTAAAACCTCCACTACTTGTGCTTTGTGCTCTGC
TTTGTGCTTCCATTTGGTGATGTGAGTTCTCAGCTACATGATCTTGCCTA
TTGCTCATTCCCATGCCTCCCTCCCAAGATGGGCTCTTATCCCTTTGTTC
AGAGATTTTGAAAGAATTATATTGCGTTAAAATGGAGATTGAAATATCCA
ATGAAGAGTAAAACTCCCCGGCTAAATTATAGGTACCAAATCCTTGACAC
TCCTTCCAAAAAACCACACTTTTAAAAGGCGCTTTTCTAATATATAATCC
GGAGGAGTCCCCGAAAAAAAATAAGGTGTTAAATTTGCGAATTTTTTAAC
GGACAACCCGGCCCTTTTCGTTCTAATAATTCCTTTCCCATAAAAAAATT
TCTCCTACCCCTAAATATGTGTTCTACATATAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_k24.g1 MSMg01no374_k24.g1 CHROMAT_FILE:
MSMg01no374_k24.g1 PHD_FILE: MSMg01no374_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:00 2005
         (391 letters)



>mm_chr9_81876827_81877617
          Length = 791

 Score =  725 bits (375), Expect = 0.0
 Identities = 387/391 (98%), Gaps = 1/391 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaattttgagggatactaacaaaggcacagagtttcttagaaaagtaagcattctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaattttgagggatactaacaaaggcacagagtttcttagaaaagtaagcattctctt 260

                                                                       
Query: 61  aagtcaccaattggcctcacaattaaataactatggtcacattagaaaaaattatccgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtcaccaattggcctcacaattaaataactatggtcacattagaaaaaattatccgtg 320

                                                                       
Query: 121 gatgttacttttatctctgtgacagtttagataataaatgtcgcctgtaggccccagtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgttacttttatctctgtgacagtttagataataaatgtcgcctgtaggccccagtgt 380

                                                                       
Query: 181 tcggtggtggtgtttggggaggctttgggagtgtgcccttgctggaggaagtctgtcact 240
           ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 381 tcggtggtggtgtttggggaggcttagggagtgtgcccttgctggaggaagtgtgtcact 440

                                                                       
Query: 241 gggggcggggcttgggaatgtaaaacctccactacttgtgctttgtgctctgctttgtgc 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggggcggg-cttgggaatgtaaaacctccactacttgtgctttgtgctctgctttgtgc 499

                                                                       
Query: 301 ttccatttggtgatgtgagttctcagctacatgatcttgcctattgctcattcccatgcc 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttccatttggtgatatgagttctcagctacatgatcttgcctattgctcattcccatgcc 559

                                          
Query: 361 tccctcccaagatgggctcttatccctttgt 391
           |||||||||||||||||||||||||||||||
Sbjct: 560 tccctcccaagatgggctcttatccctttgt 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)