Query= MSMg01no375_i08.b1 MSMg01no375_i08.b1 CHROMAT_FILE:
MSMg01no375_i08.b1 PHD_FILE: MSMg01no375_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:08 2005
(478 letters)
>mm_chr9_93973812_93974689
Length = 878
Score = 828 bits (428), Expect = 0.0
Identities = 464/476 (97%), Gaps = 2/476 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctaaca-atttgcgtgtcagattcctcccagagtgcatttctaataaaaccct 62
||||||||||||| | || ||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 204 ggaattcctaacaca-gtgggtgtcagatccctcccagagtgcatttctaataaacccct 262
Query: 63 cccaggtgctgtcatctccatatccatttttcttccttcttcatgaatctttgagcaagt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cccaggtgctgtcatctccatatccatttttcttccttcttcatgaatctttgagcaagt 322
Query: 123 ctctgcatagccctgatctctaaatccatggtatctgggcttctcagggaacttgatata 182
||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 323 ctctgcatagccccgatctctaaatccatgatatctgggcttctcaggcaacttgatata 382
Query: 183 ttattacccataaatgctttactttcattctccatctctgtctctgtcctgcttcctcac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttattacccataaatgctttactttcattctccatctctgtctctgtcctgcttcctcac 442
Query: 243 cacatcctggatctcctttgaaattagatgctatactttatattaataatagaaacagac 302
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cacatcctggatctcctctgaaattagatgctatactttatattaataatagaaacagac 502
Query: 303 ccaaactgggcattagtgatgcaaatagccatcaggggtggtgagactcagaggataatt 362
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccaaactgggcattagtgatacaaatagccatcaggggtggtgagactcagaggataatt 562
Query: 363 agctccccctctgtagaagagttcagagatgagtggagttggagccatgtaaaatgattt 422
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 563 agctccccctctgtagaagagttcagagatgagtggatttggagccatgtaaaatgattt 622
Query: 423 gacttgttctggggctctggagactttggctctggctttcacaatactaattttta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gacttgttctggggctctggagactttggctctggctttcacaatactaattttta 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_i08.g1 MSMg01no375_i08.g1 CHROMAT_FILE:
MSMg01no375_i08.g1 PHD_FILE: MSMg01no375_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:08 2005
(472 letters)
>mm_chr9_94134203_94135074
Length = 872
Score = 859 bits (444), Expect = 0.0
Identities = 465/476 (97%), Gaps = 8/476 (1%)
Strand = Plus / Minus
Query: 1 ctcgctctgtatgttaggcagctttactagacaatcaccaaagttccctaaattaccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ctcgctctgtatgttaggcagctttactagacaatcaccaaagttccctaaattaccttc 613
Query: 61 ctgttttaacactttggtgaatgatggccatgcacagcactattactggttaaaggcaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ctgttttaacactttggtgaatgatggccatgcacagcactattactggttaaaggcaag 553
Query: 121 cagctggcagagggcaggcaccctctaaatcctaggaatggagcgctgactgttgccttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cagctggcagagggcaggcaccctctaaatcctaggaatggagcgctgactgttgccttc 493
Query: 181 catttgctatttctatatcatccatgagaatcagagagcaggacagacattctgctcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 catttgctatttctatatcatccatgagaatcagagagcaggacagacattctgctcaag 433
Query: 241 actg----ttttattttctgtgtttgtttaatgattactacagcttgctttgtaattatg 296
|||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 actgcagc----agcttctgtgtttgtttaatgattactacagcttgctttgtaattatg 377
Query: 297 actgcatgagcaatcctgcttgatccagggaactttcagaaagtaatgacagtaatttac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 actgcatgagcaatcctgcttgatccagggaactttcagaaagtaatgacagtaatttac 317
Query: 357 agccatgaggcctgtgtgccgctgcttatgctcttgatctggagccggcttgctcgctct 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agccatgaggcctgtgtgccgctgcttatgctcttgatctggagccggcttgctcgctct 257
Query: 417 gctgactgccgatggccacattctccacccgtatagctctccctgttcctgatgga 472
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 256 gctgactgccgatggccacattctccacccgcatagctctccctgttcctgatgga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
