Query= MSMg01no375_l19.b1 MSMg01no375_l19.b1 CHROMAT_FILE:
MSMg01no375_l19.b1 PHD_FILE: MSMg01no375_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:25 2005
(500 letters)
>mm_chr9_76046308_76047207
Length = 900
Score = 959 bits (496), Expect = 0.0
Identities = 496/496 (100%)
Strand = Plus / Minus
Query: 5 gaattcttagcctctaggaaatttcagtcttcaatagtgaaatgctttctttattttctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gaattcttagcctctaggaaatttcagtcttcaatagtgaaatgctttctttattttctt 499
Query: 65 tctagataacatggaaaaggacaataaagataaatggaatctaactactactcctttcta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tctagataacatggaaaaggacaataaagataaatggaatctaactactactcctttcta 439
Query: 125 tcatggtaatatcataaactaccatttttatctacattataaaaactggatgttatgatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcatggtaatatcataaactaccatttttatctacattataaaaactggatgttatgatt 379
Query: 185 caaatgttgttatgaggattctcaatgatatgccaacacagaataatttgtgtggcttaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 caaatgttgttatgaggattctcaatgatatgccaacacagaataatttgtgtggcttaa 319
Query: 245 agattgaaagaaaacatgcagcaaaaccatgacattctttccaacaatgattatgaaggc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agattgaaagaaaacatgcagcaaaaccatgacattctttccaacaatgattatgaaggc 259
Query: 305 aattgtttagcccttccatcctctattctgagaaatacatatttttaaatttaattttat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aattgtttagcccttccatcctctattctgagaaatacatatttttaaatttaattttat 199
Query: 365 ttgtaattcattttttacacttcatattctattccataccccctcccctcccacccttca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttgtaattcattttttacacttcatattctattccataccccctcccctcccacccttca 139
Query: 425 actcctccacatcccacacctcctccccaccacaccctgtttccacatggatgcccccac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 actcctccacatcccacacctcctccccaccacaccctgtttccacatggatgcccccac 79
Query: 485 cctccactctatctga 500
||||||||||||||||
Sbjct: 78 cctccactctatctga 63
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_l19.g1 MSMg01no375_l19.g1 CHROMAT_FILE:
MSMg01no375_l19.g1 PHD_FILE: MSMg01no375_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:25 2005
(513 letters)
>mm_chr9_75900198_75901115
Length = 918
Score = 922 bits (477), Expect = 0.0
Identities = 506/519 (97%), Gaps = 7/519 (1%)
Strand = Plus / Plus
Query: 1 actatctcagctatgaatggaaagtagggcaggctaggcagttaggagcattgggtcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatctcagctatgaatggaaagtagggcaggctaggcagttaggagcattgggtcctg 260
Query: 61 tttggagaggggcaatcagtaagtagcatttcttgggagctatgatgtgtgagatggaaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tttggagaggggcaatcagtaagtagcatttcttgggagctatgatgtgtgagacggaaa 320
Query: 121 ggaagcaaacagcatcctttcttctgtctgtagactcagtcatctatgcacaaaccaaag 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaagcaaactgcatcctttcttctgtctgtagactcagtcatctatgcacaaaccaaag 380
Query: 181 caccaaacccacattcaaattcaggggaaagcagtggcttcttgcttgattcattgtggt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 caccaaacccacattcaaattcaggggaaagcagtggcttcttgcttgattctttgtggt 440
Query: 241 taataaaaaaaaaaaaaac------atttttacagtaatacatataaattatgcaaagta 294
||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 taataaaaaaaaaaaaaacccaaacatttttacagtaatacatataaattatgcaaagta 500
Query: 295 atgtattgttatatttctatacatgtatataatatgtttgaatcagattctcttcttatc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtattgttatatttctatacatgtatataatatgtttgaatcagattctcttcttatc 560
Query: 355 ttcattatcctctcttatcctctcccttctcttcctcttccatcttatagtaccatcacc 414
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcattagcctctcttatcccctcccttctcttcctcttccatcttatagtaccatcacc 620
Query: 415 ttactccctcccccccgccccgctaaatttacataaccaagaaaacatgatacttatctt 474
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttactccc-ccccctcgccccgctaaatttacataaccaagaaaacatgatacttatctt 679
Query: 475 tgtgaagctggcttatttggcatagcatatgtttttctg 513
|||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtgaagctggcttatttggcatagcatatgtttttctg 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 918
Length adjustment: 10
Effective length of query: 503
Effective length of database: 908
Effective search space: 456724
Effective search space used: 456724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
