BAC Information

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BAC

Clone NameMSMg01-376I11
Chromosome9 (Build37)
Map Location 90,365,311 - 90,365,554
singlet/doubletsinglet
Overlap genenone
Upstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
Downstream geneLOC100039925, EG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376I11.T7 (MSMg01no376_i11.b1)MSMg01-376I11.TJ (MSMg01no376_i11.g1)
ACCAG481824AG481825
length735737
length of high quality
(start - end)		244 (74 - 317)575 (71 - 645)
definitionCHROMAT_FILE: MSMg01no376_i11.b1 PHD_FILE: MSMg01no376_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:27 2005CHROMAT_FILE: MSMg01no376_i11.g1 PHD_FILE: MSMg01no376_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAACATCCGCGGAA
TTCAAATCAATTACTATTAGTCCCAAAACCTAGAAATGTTAGGGAATCGT
TAAAGTATATTTGGGAAGAGAACTAAATCTAGTCAGGTTTATTTAAATAA
CTTTTAAAAGACTCATTGAAGGTTTCCATTTTTAAAAAATTGAACCTGTA
ATTGAATGGTGGGATTAACAATTATGTAGGATACATTATTTCCATTGCAT
TTGCTACACAAGTCCTCCTTAACTTTTTAGCAAATAGTGGCTAGAATATT
TTTACTCGATGTGTCTACTTTGTTTTCTTCCTCTCTTATATAAACCAACA
AGGAAACTACAGGTGTACCAATGTATTTAAACATCTCTTTCATCACTGCC
ACCATTAAAAATATTCAACAGCTCCCTACAATGGCTGATTTATCATTTTG
TCACAACTAGGCCATGATGACCAATACTTAATATAAAACTTTATTTTGAA
TATTTCTGTGAGGATTTTTTTATATATTTTTTATTACGTATTTTCCTCAA
TTACATTTCCAATGCTATCCCAAAAGTCCCCCACACCCTCCCCCCCCCCC
ACTCCCCTACCCACCCATTCCCATTTTTTGCCCCTGCNGNTCCCCTGTAC
CGTTTTATATATTGTTTGCCTGTCCAAAGGGCCTCTCCTTCCAGTGATGG
CCGATTAAGCCATCTTTTGATAATTATGCGCTTAA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTAGCCCATTTTTAAAT
GGGGTTATTTGAATTTCTGGAGTCAAGCTTTTTGAGCTCTTTGTATATAT
TGGATATTAGTCCCCTATCAGATTTAGGACTGGTAAAAATCCTTTTCCAT
TCTGTTGGTGGCCTTTTTGTCTTAGCATGGTCTTTGTATTTCTTTTCAGC
TCATTTTTGCTTTTGGAGCAACCATGGCCCAAGAACACAGACTTAGTTTC
CCCTACATTCCATGTTCCAAAATGGAAGCAGTTTCATGAAGTTTTATCTT
TTTACAGAGGAAAGAGAGTCATAAATCAAGAGAAGTTTAAAACTCACCTG
TGAGTACATTGGAGAGGTAGTGGGAAAATCTAAAACCATTAGATTCCTAA
ACATTCCTAAAGGTAGCCACCAAGTTCTATTTCCTTATTTGGCCATTTTT
TCCTCCTGAGGTTGCAGTGTTGATGTCCAGTAACCAAAAGCCCACATTTG
GCTCACATAATTATCATGCCCAATTAAAGTTAAACTTCTTATCCTAACAT
TGAATTTCCCCCTTTACCTTCATAAACCACCATTTGCCTATGGGCCTCAT
CTGTCTCCTCTTTATCCAGAGGCGGTAGTCCTTTGTCCCTCTACAACAAA
TACCTCTTTCCCTTCCCCTTAATCCCCTCCCTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_i11.b1 MSMg01no376_i11.b1 CHROMAT_FILE:
MSMg01no376_i11.b1 PHD_FILE: MSMg01no376_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:27 2005
         (244 letters)



>mm_chr9_90365111_90365754
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaacctagaaatgttagggaatcgttaaagtatatttgggaagagaactaaatctagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caaaacctagaaatgttagggaatcgttaaagtatatttgggaagagaactaaatctagt 385

                                                                       
Query: 61  caggtttatttaaataacttttaaaagactcattgaaggtttccatttttaaaaaattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caggtttatttaaataacttttaaaagactcattgaaggtttccatttttaaaaaattga 325

                                                                       
Query: 121 acctgtaattgaatggtgggattaacaattatgtaggatacattatttccattgcatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acctgtaattgaatggtgggattaacaattatgtaggatacattatttccattgcatttg 265

                                                                       
Query: 181 ctacacaagtcctccttaactttttagcaaatagtggctagaatatttttactcgatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctacacaagtcctccttaactttttagcaaatagtggctagaatatttttactcgatgtg 205

               
Query: 241 tcta 244
           ||||
Sbjct: 204 tcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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